Rhodococcus sp. SGAir0479: E7742_03470
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Entry
E7742_03470 CDS
T11403
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhsq Rhodococcus sp. SGAir0479
Pathway
rhsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7742_03470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhsq03019
]
E7742_03470
03009 Ribosome biogenesis [BR:
rhsq03009
]
E7742_03470
Enzymes [BR:
rhsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E7742_03470
Messenger RNA biogenesis [BR:
rhsq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E7742_03470
Ribosome biogenesis [BR:
rhsq03009
]
Prokaryotic type
rRNA helicases
E7742_03470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCQ90370
LinkDB
All DBs
Position
719695..721509
Genome browser
AA seq
604 aa
AA seq
DB search
MSDTERDPQTDDNPITFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQ
TGTGKTAAFAIPILSRLDVERKVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYG
GQAYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSHLEYLVLDEADEMLKMGFQDDVE
RILADTPEYKQVALFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQR
KLDALTRILEVESFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQL
KSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAP
RERHLLKSIERTTRQPLTEIQLPTVEDVNAQRVAKFGDSITASLSSENLALFRKLIEDYE
REHDVPLADIAAALAVQSRDGESFLMEPEPPAPPRREREPRERPARRFDDGGPSGPRVGR
DGQEFATYRIAVGKRHKVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPANLPKET
VEALRATRISGVLIQLQPDQGAPSGRPSRGGRDERAGGKFSRPRGDRSDRGDRGDKYGKR
RPRD
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaccgagcgcgacccgcagaccgacgacaatcccatcaccttcgccgacctc
cagatcgacgaacgggtgctgaaggccctttccgacgtcggctacgagtcgccctcgccg
atccaggccgcgaccatcccgacgctgctcgagggcaaggacgtcgtcggcctggcccag
acgggtaccggtaagacggccgcgttcgcgattccgatcctctcccgcctcgacgtcgag
cggaaggtgccccaggcactgatcctggcgccgacgcgcgagctcgcgctgcaggtcgcc
gaggcgttcggcaagtactcggcacacatccccggtctccaggtgctgccgatctacggc
ggtcaggcctacggcgtgcagctgtcgggactgcggcgcggcgcccagatcatcgtcggt
acgcccggtcgcgtgatcgaccatctcgagaagggcaccctcgacctctcccacctcgag
tacctcgtgctcgacgaggccgacgagatgctcaagatgggcttccaagacgacgtcgag
cggatcctcgccgacacgcccgagtacaagcaggtcgcactgttctcggcgaccatgccg
ccggcgatccgcaagatctccaagcagtacctgcacgatcctgtcgagatcaccgtcaag
gcgaagaccgcgacggcgtcgaacatcacccagcgctgggtgcaggtggcacaccagcgc
aagctcgacgccctcacccgcatcctcgaggtcgagtcgttcgaggcgatgatcatcttc
gttcggaccaagcaggccaccgaggatctcgccgagcgcctgcgggcccgcggcttctcg
gccgccgcgatcaacggcgacatcgtgcaggcgcagcgtgagcgcacgatcggccagctc
aagtccggcgcgctcgacattctcgtcgccaccgacgtcgcggcgcgtggcctcgacgtc
gaccggatctcgcacgtcgtcaactacgacatcccgcacgacaccgagtcctacgtgcac
cgcatcggccgcaccggtcgcgccggccgcaccggtgacgcgctgctgttcgtggctccg
cgcgagcggcatctgctcaagtcgatcgagcgcaccacgcggcagccgctcaccgagatt
cagttgcccaccgtcgaggacgtcaacgcgcagcgtgtcgcgaagttcggcgactccatc
acggcgagcctgagctcggagaatctggcgctgttccgcaagctcatcgaggactacgag
cgcgagcacgacgttccgctcgccgacatcgccgccgcgctggcggtgcagtcccgcgac
ggcgagtccttcctgatggagcccgagccgccggccccgccgcgccgcgagcgtgagccg
cgggagcggcccgcccgccggttcgacgacggcggtccgagcgggccgcgcgtcggtcgc
gacggtcaggagttcgccacctaccgcatcgcggtgggcaagcggcacaaggtcgttccg
ggcgcgatcgtcggtgccatcgcgaacgagggtggcctgcgccgcagcgacttcgggcac
atcagcatccggcccgatcacagcctggtcgagctgcccgcgaacctgccgaaggagacg
gtggaggcgctgcgcgcgacgcggatctcgggcgtgctgatccagctgcagcccgatcag
ggtgcgccgtccgggcggccctcccgcggtggccgcgacgagcgggcgggcggcaagttc
agccgcccccggggtgaccgaagcgatcggggcgatcgaggcgacaagtacggcaagcgt
cgcccgcgcgactga
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