Rhodococcus sp. SGAir0479: E7742_04005
Help
Entry
E7742_04005 CDS
T11403
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhsq Rhodococcus sp. SGAir0479
Pathway
rhsq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhsq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
E7742_04005 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhsq03400
]
E7742_04005 (recD)
Enzymes [BR:
rhsq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
E7742_04005 (recD)
DNA repair and recombination proteins [BR:
rhsq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E7742_04005 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
UvrD-helicase
TraI_hel_assoc_N
SH3_13
AAA_22
AAA_24
SLFN-g3_helicase
AAA_28
Motif
Other DBs
NCBI-ProteinID:
QCQ90469
LinkDB
All DBs
Position
843697..845553
Genome browser
AA seq
618 aa
AA seq
DB search
MIEARVAQRGKGMLREFNEAGVLEAADVHVALRLATLSGETREPVHLATALAVRAVRSGS
VCLELSRIREVTVDEEFEVDPAALPWPDDAVVAEGLASSPLVVGGQAGPLRPLRLVDGLL
YLDRYYRQEQTVRRILDERAHGHPTVDEDLLRAGLDELFRDFADPSRPSDAPDRQRIAAA
VAATHWTSVIAGGPGTGKTHTVARALALLARQQPGLRIGLAAPTGKAAARLQESVREQAE
LVGLRSELPAMTLHRMLGWQRGTSRFRFNETNHLPYDVIVVDETSMVSLTMMCRLLEAVR
PEARLVLVGDPDQLTSVDAGAVLADLVARPVTGVENPVLARVVGVDLSASDDPAEAALSR
SERDRLRGGVIRLSRGRRFGGAIAQLAVAVRDGDEDRALEILRSGAADVSFVDPEDLAGL
RADVVSTSAEVTAAALAGDAAGAVRASEKHRLLCAHREGPFGASWWARNAMTWIGEATGS
RLDPERWYAGQPLMVTANDHEMRIYNGDTGVVVADGSEVSGGDLVAAFARGEEPYLVHLS
HLASVQTVYAMTIHRSQGSQYDVVSVILPGEESSLLTRELLYTAITRARTHVRIVGTEAA
VRAAVGRRVLRASGLRRG
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaggcacgcgtcgcgcagcgcggcaaggggatgctgcgggagttcaacgaggcc
ggggtgctcgaggccgccgacgtgcacgtcgcgctgcggctggcgacgctcagcggggag
acccgcgagccggtgcacctggcgacggcgctggcggtgcgggcggtgcggtcgggctcg
gtgtgcctggagctgagccggattcgggaagtgacggtcgacgaggagttcgaggtcgat
cccgcggcgctgccgtggccggacgacgccgtcgtcgccgagggcttggcgtcgagtccg
ctggtggtgggcggccaggccgggccgctgcgcccgctgcggctggtggacgggctgctg
tacctggatcggtactaccggcaggagcagacggtgcgccggatcctggacgagcgcgcg
cacggccacccgaccgtcgacgaggacctcctgcgggccgggctggacgagttgttccgg
gacttcgcggatccgtcgcgtccgtcggacgccccggaccggcagcgcatcgcggcggcc
gtcgcggccacgcactggacgtcggtgatcgcgggcggtccgggcaccggcaagacgcat
acggtggcgcgggcgctggcgctgctcgcgcggcagcagccgggactgcggatcgggttg
gcggcgcccaccggcaaggcggcggcgcggctgcaggagtcggtgcgcgagcaggcggag
cttgtcggtctgcggtcggagttgccggcgatgacgctgcaccggatgctcggctggcag
cgagggaccagccggttccggttcaacgagaccaaccatctgccgtacgacgtgatcgtg
gtggacgagacgtcgatggtgtcgctgacgatgatgtgccggctgctcgaggcggtgcgc
ccggaggcgcggctggtgctggtgggcgacccagaccagttgacgtcggtggacgccggc
gcggtgctcgccgacctggtcgcgcggccggtgaccggggtggagaacccggtgctggcg
cgggtggtgggcgtggacctgtcggcgtcggacgatccggccgaggcggcgctgagccgg
tcggagcgggatcggttgcggggtggcgtgattcggctcagtaggggtcgccggttcggt
ggcgcgatcgcgcagctggcggtggcggtgcgcgacggtgacgaggaccgcgccctcgag
attctgcggagcggggcggcggacgtgtcgttcgtcgacccggaggatctggccgggctg
cgcgccgatgtggtgtcgacgtcggcggaggtgacggcggcggcactggccggggatgcg
gcgggcgcggtgcgggcgtcggagaagcatcggctgctgtgtgcgcaccgggagggcccg
ttcggggcgtcgtggtgggcgcgcaacgcgatgacgtggatcggggaggcgacaggaagc
cgactggacccggagcgctggtacgccgggcagccgctgatggtgaccgcgaacgaccac
gagatgcggatctacaacggggacaccggggtggtggtcgccgacggttctgaggtttcg
ggcggcgatctggtcgcggccttcgcgcgcggtgaggagccgtatctggtgcacctgagc
cacttggcgtcggtacagacggtgtacgccatgacgattcaccgcagtcagggcagccag
tacgacgtggtctcggtgatcctgccgggggaggagtcgtcgctgctcacccgggaattg
ctgtacacggcgatcacccgtgcgcggacgcacgtgcggatcgtggggaccgaggcggcc
gtgcgggcggccgtggggcgacgagtcctgcgggcgagtgggttgcggcggggatga
DBGET
integrated database retrieval system
