Pseudorhizobium banfieldiae: NT26_0944
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Entry
NT26_0944 CDS
T04765
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rht
Pseudorhizobium banfieldiae
Pathway
rht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NT26_0944 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rht03019
]
NT26_0944 (deaD)
03009 Ribosome biogenesis [BR:
rht03009
]
NT26_0944 (deaD)
Enzymes [BR:
rht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NT26_0944 (deaD)
Messenger RNA biogenesis [BR:
rht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NT26_0944 (deaD)
Ribosome biogenesis [BR:
rht03009
]
Prokaryotic type
rRNA helicases
NT26_0944 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
CCF18668
UniProt:
L0NC64
LinkDB
All DBs
Position
949921..952014
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AA seq
697 aa
AA seq
DB search
MTDHEGAVPAIAKALAKRGYATLTPVQQAMLDPALQTSDALVSAQTGSGKTVAFGIAMAP
TLLDDGERFERAGAPLALVIAPTRELAMQVNRELAWLYEMTGAVIASCVGGMDIRSERRA
LERGAHIVVGTPGRICDHIRRNALDMSELRVAVLDEADEMLDLGFREDLEFILDAAPEGR
RTLMFSATVPSGIAKLAKRYQRDAVRISTTAEEKQHADIEYRALLVAPSDRENAIINALR
FYDAKNAIVFCSTRAAVNHLTARFNNRNFDVVALSGELTQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNSETLLHRSGRTGRAGNKGVSALIVPVNQRRKAERLL
AGADVTPTWAHPPSADEVIARDQERLLADPVFDEAPREEEQELIARLVETYGAEKLAAAF
VNLHRAKNAAPEDLLPVSLDPGARKGREGKAGDPASRPLTPRGDFGPAVWFSLSVGRKQR
AEPRWLIPTICRNGDLSKNEIGAIKMQADETYVEIAADHAERFMAKLGKDRMMDRGIRVT
RLERAPDFSKFTRGDDEAPRRDGPRMDKPWKGKKSGDGDAAERPRREKPFRERPSGEAPA
RDWKPKGRSADAPRDMRSVDDEVWGDPKPKASFGKGKPARGGDTTGQPQKKGSGKSFGDK
PFKGKAAGKDTAGKPFGSKGKAGGGPKKFGKGNDRAR
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcacgaaggcgccgttccggcgatcgccaaggcattggcgaagcgcggctat
gcgacgctcacccccgtccagcaggccatgctcgacccggcgctgcagacctccgatgcg
ctggtttcggcccagacgggctcgggcaagacggtcgccttcggcatcgccatggcgccg
acgctgctggacgacggtgagcgcttcgaacgcgctggcgcaccgctggcgctcgtcatc
gcgccgacccgtgaactcgccatgcaggtgaaccgcgaactggcttggctctacgaaatg
accggggcggtgatcgcctcctgcgtcggcggcatggacatccgcagcgagcggcgggcg
ctggagcgcggtgcgcatatcgtcgtcggcacgcccggccgcatctgcgatcacatccgc
cgcaatgcgctcgacatgtcggagcttcgggtcgcggtgctcgacgaggccgacgagatg
ctcgacctcgggtttcgcgaggacctggaattcatcctcgacgcagcaccggagggccgg
cggacgctgatgttctccgcgacggtgccgtcggggattgccaagcttgccaagcgctac
cagcgcgatgcggtgcgcatttcgaccacggccgaggagaagcagcatgccgacatcgag
tatcgggcactgctcgtcgctccgtccgaccgcgagaacgccatcatcaacgcgctgcgc
ttctacgatgcgaagaatgccatcgtcttctgctcgacccgcgcggcggtgaaccacctg
acggcacgcttcaacaaccgcaacttcgacgtcgtggcgctctccggcgagctgacgcag
aacgaacgcacgcacgcgctgcaggcgatgcgcgacggccgcgcccgtgtctgcatcgcc
accgacgtcgccgcccgcggcatcgacctgccgggcctcgacctcgtcatccatgccgac
ctgccgaccaattccgaaacgctgctgcaccgctccggccgcacgggccgtgccggcaat
aagggcgtcagcgcgctgatcgtgccggtcaaccagcgtcgcaaggcagagcgcctgctg
gcaggcgccgatgtgacgccaacctgggcgcatcctccgtctgccgacgaggtgattgcg
cgcgaccaggagcgccttctggccgatccggtgttcgacgaggcgccgcgtgaggaagag
caggaactgattgcccgtctggtggaaacctatggcgcggaaaagctcgctgccgctttc
gtcaacctgcaccgggcaaagaatgccgcgccggaagacctcttgccggtctcgcttgat
ccaggcgcccgcaaaggtcgtgaaggaaaggccggtgatcccgcatctcgtccgctgacg
ccgcgcggcgacttcggtcccgccgtctggttctcgctgtcggtcggccgaaagcagcgc
gccgagccccgctggttgatccccaccatctgccgcaacggtgatctctccaagaacgag
atcggcgcgatcaagatgcaggcggacgagacctatgtagagatcgccgccgaccatgcc
gaacgcttcatggcgaagctcggcaaggaccggatgatggaccgcggcatccgcgtcacc
cgcctggagcgggcgccggacttcagcaagtttacccgaggcgacgacgaggccccgcgc
cgtgatggcccgcggatggacaagccctggaagggcaaaaagtcgggtgatggcgatgcc
gccgagcggccccggcgggagaagccgttccgcgagagaccttctggcgaggcgcctgcc
cgggactggaagccgaagggtaggtccgctgacgcgccgcgtgacatgcgcagcgtcgat
gacgaagtctggggtgatccgaagccgaaggcgagcttcggcaagggcaagcctgcccgt
ggcggcgatacaactgggcagccgcagaagaagggttccggcaagtcgttcggcgacaag
ccgttcaagggcaaggctgccggcaaggataccgcgggcaagccgttcggttccaagggc
aaggcgggtggcggtcccaagaagttcggcaaggggaacgaccgcgcccggtga
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