Pseudorhizobium banfieldiae: NT26_1173
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Entry
NT26_1173 CDS
T04765
Symbol
rnd
Name
(GenBank) Ribonuclease D (RNase D)
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rht
Pseudorhizobium banfieldiae
Brite
KEGG Orthology (KO) [BR:
rht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rht03016
]
NT26_1173 (rnd)
Enzymes [BR:
rht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NT26_1173 (rnd)
Transfer RNA biogenesis [BR:
rht03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NT26_1173 (rnd)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
CCF18897
UniProt:
L0NEZ4
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All DBs
Position
complement(1170365..1171510)
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AA seq
381 aa
AA seq
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MIETTAALEDACAKLAQSDFITIDTEFLRETTFWPQLCLIQMASPTMEVLVDPLAKGLDL
KPFFELMADRKVIKVFHAARQDIEIIHHLGNLVPHPIFDTQVAAMVCGFGDSVSYDQLVQ
RTTGAHIDKTSRFTDWSRRPLSDKQLEYALADVTHLRDVYAALKAQLEREGRAGWLTEEM
AILESANTYDIHPDDAWLRLKARLRKPTELAIVKFVAAWREREARSRNVPRSRVLKDDAI
YEIAQQQPKDTDALSRLRTIPKGWERSASGTAVIEAVNSALTLPKAEMPHAPKPTRSPEG
TGAAVELLKVLLKLISDKEGVAAKVIANSDDLEKIAAEGEGADVAALHGWRRELFGDTAL
KLISGGVALRFVDKKVEAVEL
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaacgactgctgccctcgaagacgcctgcgccaagctcgcccaatcggacttc
atcaccatcgataccgagttcctgcgcgagaccaccttctggccgcagctctgcctgatc
cagatggctagcccgacgatggaggttctcgtcgatccgctggcgaagggtctcgacctc
aagcctttcttcgagctgatggccgataggaaggtgattaaggtctttcatgcggcgcgc
caggatatcgagatcatccatcacctcggcaatcttgtgccgcatccgatcttcgacacg
caggtcgcggccatggtctgcggcttcggtgacagtgtctcctatgaccagctcgtgcag
cgcaccaccggcgctcatatcgacaagacctcgcgcttcaccgactggagccggcggccg
ctttctgacaagcagctggaatatgcattggcggacgtgacgcatctgcgcgacgtctat
gcggcgctgaaggctcagttggaacgggagggccgcgccggctggctgacggaggaaatg
gcgattctggaatcggccaatacctacgacatccaccccgacgatgcctggctgcggctg
aaggcgcggctccgcaagccaaccgagcttgcgatcgtcaagttcgtggcggcatggcgc
gagcgggaagcgcgcagccgaaacgttccgcggtcgcgggttctgaaggacgatgcgatc
tacgaaatcgcccagcagcagccgaaggatacggacgcgctctcgcggctgaggacgatc
ccgaagggctgggaacgatccgcctcgggaaccgcggtcatcgaagcggtcaattccgca
cttacattgccgaaggcagagatgccgcatgccccgaagccgacgcgctctcccgaaggc
accggtgctgccgtcgaacttctcaaggtgctgctgaagctgatttccgacaaggagggt
gtcgccgccaaggtgatcgccaattccgacgatctcgagaagatcgccgcagagggcgaa
ggcgccgacgtggctgcgctgcatggctggcggcgcgaactgttcggcgacaccgccttg
aagctgatctccggcggcgttgcactgcgcttcgtggacaagaaggtcgaggcggtggag
ctctag
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