Pseudorhizobium banfieldiae: NT26_2018
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Entry
NT26_2018 CDS
T04765
Name
(GenBank) putative single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rht
Pseudorhizobium banfieldiae
Pathway
rht03410
Base excision repair
rht03430
Mismatch repair
rht03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NT26_2018
03430 Mismatch repair
NT26_2018
03440 Homologous recombination
NT26_2018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rht03400
]
NT26_2018
DNA repair and recombination proteins [BR:
rht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NT26_2018
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NT26_2018
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NT26_2018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CCF19742
UniProt:
L0NHH6
LinkDB
All DBs
Position
complement(1954600..1956435)
Genome browser
AA seq
611 aa
AA seq
DB search
MTVKHLPLITSTDTPVDPVPRAFLGVERSACGQRWVSRLDQAAQNRALAIAQVHGLPDLV
ARVLAGRGVGLDEALAFLDPTIRSLMPEPYTLTDCEQAAKRIALAVERGEKVAIFGDYDV
DGAASSALLYRFLAHFGVTAEIYIPDRIFEGYGPNPAAIRQLVQKGAGLIVTVDCGSTSH
EALDAAREEGCEVVVIDHHQLGHELPHCLALVNPNREDDLSGQGHLCAAGVVFMVLVATA
RLLRQQGHPRAAGLDLLAWLDLVALATVCDVVPLRGLNRAFVVKGLLAARHMNNAGLAAL
LRKAGLGGPVTPYHLGFLVGPRINAGGRISDAALGSRLLTLDDTAVAEEIAGRLDELNRE
RQAMEAAMLAEAEAEVMAEYGDGESATVLVTARDNWHPGIVGLLAARLKEKFRRPAFAVA
FDPSGKGTGSGRSINGFDMGRMVRAAVDEGLLVKGGGHAMAAGLTVERHNLGRLRAFFEE
KAADTVASLVANHVLKIDGALSASGATLDMLDQLEKAGPYGSGHPQPVFAIPSHRVRDAR
LVGTAHVKVQLEAVDGSRLDGIAFRSADTPLGRLLLNSRGSQIHVAGCLSGDHWQGNRRI
QLRILDAAPAS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaagcatctgccgctcatcacgtccacagacacgccggtcgatccggtgccg
agggccttcctcggcgtcgagcgctccgcctgcgggcagcgatgggtatcgcggcttgat
caggctgcgcagaaccgcgcgcttgccattgcccaggttcacggccttcccgacctcgtg
gcgcgtgtgctggcggggcgcggcgtcgggctggacgaggctctggccttcctcgatccg
accatccgctcgctgatgcccgagccatacacgctgacggattgtgagcaggccgccaag
cgaattgcgctggccgtcgagcgtggggagaaggtcgccatcttcggtgactatgatgtg
gacggtgctgcctcttcggccctgctctatcgattcctcgcacacttcggtgtgacggct
gagatctacattcccgaccgtatcttcgagggctatggcccgaaccccgccgcgatccgc
cagctcgtccagaagggcgccggattgattgttaccgtggattgcggctcgaccagccac
gaagctctcgatgccgcacgggaggagggttgcgaggtcgtggtcatcgaccaccaccag
cttggccatgaacttccccactgtctggcgctggtcaacccaaaccgcgaggacgatctg
tccggtcaggggcacctgtgcgcagccggggtcgtcttcatggtgctggtggcgacggca
cggctgctccgccagcagggacatcctcgagcggcagggcttgacctgctggcctggctg
gacctggtggccttggccacggtctgcgatgtcgtgccgctcaggggcctcaaccgtgcc
ttcgtggtcaaaggcctgctggcggctcgtcacatgaacaatgccggactcgccgctctc
ctgcgcaaggcaggacttggtggtcccgtcacaccctatcatctgggcttcctggtgggc
ccgcgtataaatgctggagggcgcatcagcgatgcggcactcggcagccggctgctgacg
ctcgacgacacggcggtagccgaggaaatcgccgggcgtctcgatgagctcaaccgcgaa
cggcaggccatggaggcggcaatgctcgccgaggccgaggcggaggttatggcggagtat
ggagacggcgagtcggcgactgtgctggtgactgctcgggacaactggcatccgggcatt
gtcgggctgctggcggcgcgcctgaaggagaaattccgcagacctgccttcgcggtcgct
ttcgatccgtctgggaaggggacgggttcgggacgctccatcaacggctttgacatggga
cgcatggtgcgtgccgcggtcgacgaggggctgctggtaaagggcggcggtcatgccatg
gcggcaggactgaccgtcgagcgccacaacctcgggcggctgcgtgccttctttgaggag
aaggctgccgataccgtcgcttcgctcgtcgccaatcacgtgttgaagatcgatggagcg
ctctcggcatcgggagcgacgcttgacatgctggaccagctcgaaaaggcgggcccttac
ggttcggggcacccccagccggtgtttgcgataccgtctcatcgggtgagggatgcgcgg
ctggtggggaccgcccatgtgaaggtccaacttgaggcggttgacgggtcgcgactggac
ggaatagcgttccgatctgccgacacaccgctgggacggcttctcctcaattcccgcggc
agccagatccacgttgcgggctgcctgagtggcgatcactggcaaggcaaccggcgaatt
cagctgcgaattctggatgctgcgccggcgagctga
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