Rhodococcus sp. PBTS 1: A3Q40_00350
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Entry
A3Q40_00350 CDS
T05182
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhu
Rhodococcus sp. PBTS 1
Pathway
rhu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A3Q40_00350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhu03021
]
A3Q40_00350 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhu03400
]
A3Q40_00350 (rpoC)
Enzymes [BR:
rhu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A3Q40_00350 (rpoC)
Transcription machinery [BR:
rhu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A3Q40_00350 (rpoC)
DNA repair and recombination proteins [BR:
rhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A3Q40_00350 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AMY17760
LinkDB
All DBs
Position
341279..345235
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLEEIWSTFTKLAPKQLIVDELI
YRELVDRYGEYFTGAMGAESIQKLMETFDIEAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQSTGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDETAKGQLS
PATGEGPEQGIYASPAEAQMAVDRGVLTVQSPIKVRLTNQRPSRELEAELFPEGWAPGDA
WTAETTLGRVLFNELLPANYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTISISDVLMPPEKAEIMESFEAQADQIERKYQRGALDHTERNSALVKIWQEA
TEQVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGITTTI
AEKLADGTMIRDAHVETSTYARTLAADAVDADGNVVVERGHDLGDPAIDALLAAGITTVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIADVSGRIQLEEGDRFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHDDGTERLLSDGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQE
VYRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERSEFEASNRRVVSEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNITVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSGDFR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgcaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgtcgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgccgtcgcggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtggac
gacgagctccgccacaacgagctctcgaccctcgaggccgagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgccgatctcgaggcccgcgcgcagaagctcgaggcggac
atcgccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgtgaccgcgcgcagcgtgagctggatcgtctcgag
gagatctggtccaccttcaccaagctggcgccgaagcagctcatcgtcgacgagctgatc
taccgcgagctggtcgaccgctacggcgagtacttcacgggcgcgatgggcgcggagtcc
attcagaagctcatggagaccttcgacatcgaggccgaggccgagtcgctgcgcgagacc
atccgcagcggcaaggggcagaagaagctccgcgccctcaagcgtctcaaggtcgtggcc
gcgttccagtccaccggcaactcgccgatggggatggtcctcgacgccgtgccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgcttcgccacctcggacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaatcgcctcaagcgactgatagacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcc
ctgttcgacaacggtcgtcgcggccgcccggtcaccggaccgggcaaccgcccgctgaag
tcgctgtccgatctgctcaagggtaagcagggccgcttccgtcagaacctgctgggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctcatggcactcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgatctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgtcagcgt
gcccaggtgtgggacgtcctcgaagaggtcatcggcgagcaccccgtgctgctgaaccgc
gcccccacgttgcaccgcctcggtatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcccgcgtgctgatgctg
tcgtcgaacaacatcctctcgccggcgtcgggtcgtccgctcgccatgccgcgtctggac
atggtgacgggtctgttccacctgacccgtctcgacgagaccgccaagggtcagctgtcg
ccggccaccggtgagggccccgagcagggcatctacgcgagcccggccgaggcacagatg
gccgtcgaccgcggtgtgctcacggtgcagtcgcccatcaaggtgcggctgaccaatcag
cgcccctcgcgggagctcgaggccgagctgttccccgagggctgggcgccgggcgacgcc
tggaccgccgagaccacgctgggccgcgtgctcttcaacgagctgctgccggcgaactac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggcgacgatcatcaacgatctcgcc
gagcggtacccgatgatcgtggtcgcgcagaccgtggacaagctcaaggacgcgggcttc
tactgggccacgcggtcgggcgtcaccatctccatctccgacgtgctcatgccgccggag
aaggcggagatcatggagtcgttcgaggcgcaggccgatcagatcgagcgcaagtaccag
cgcggcgcgctcgaccacaccgagcgcaactcggctctggtcaagatctggcaggaagcg
accgagcaggtcggtaaggccatggaggcccacttccccgacgacaaccccatcccgatg
atcgtgaagtccggcgccgccggaaacatgactcaggtgcggtcgctcgccggcatgaag
ggtctggtgaccaacccgaagggcgagttcatcccgcgtccgatcaagtcctccttcaag
gagggcctgacggtcctcgagtacttcatcaacacgcacggtgcccgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggctacctgacccgccgtctggtggacgtgtcg
caggacgtcatcgtgcgcgaggtggactgcgggaccgagcgcggcatcaccacgaccatc
gcggagaagctggccgacggcacgatgatccgggacgcgcacgtcgagacctcgacgtac
gcccgcaccctggccgcggacgcggtcgacgccgacggcaacgtcgtcgtcgagcgtgga
cacgacctgggcgacccggccatcgacgcactgctcgcggccggcatcaccacggtcaag
gtgcgctccgtgctcacctgcaccaccggcacgggcgtctgcgccacctgctacggccgc
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggtgagcccggcacgcagctgaccatgcgtacgttccaccagggtggtgtggcc
ggcgacgacatcaccggtggtctgccccgcgtgcaggagctcttcgaggctcgtgtgccc
aagggcaaggcgcccatcgcggacgtctcgggtcgcatccagctggaggagggtgatcgc
ttctacaagatcaccatcgttccggacgacggcggtgaagaggtcgtctacgacaagctc
tcgaagcgtcagcgtctgcgtgtgttcaagcacgacgacggcaccgagcgcctgttgtcg
gacggcgaccacgtggaggtcggccagcagctcatggaaggtgctgccgatccgcacgag
gtcctgcgtgtcatgggcccgcgtcaggtgcagatccacctcgtcaacgaggtccaggag
gtgtaccgcagccagggtgtgtccatccacgacaagcacatcgagacgatcgtgcgccag
atgctccgccgcgtgaccatcatcgattcgggctccacggagttcctgcccggatcgctg
accgagcgcagcgagttcgaggcgagcaaccgtcgcgtcgtgtccgagggtggcgagccc
gcggccggacgtccggtgctgatgggtatcaccaaggcatcgctggcgaccgactcgtgg
ctgtccgcggcgtcgttccaggagaccactcgcgtgctgaccgacgcggcgatcaactgc
cgctcggacaagctgatcggtctcaaggagaacgtgatcatcggcaagctgatcccggcc
ggcaccggcatcaaccggtaccggaacatcacggtgcagcccactgaggaggcacgggcc
gcggcctacgcggtgccgtcgtacgacgatcagtactacagcccggacggcttcggccag
aacaccggtgctgccgtaccgctcgacgactacggcttctcgggcgacttccggtag
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