Rhodococcus sp. PBTS 1: A3Q40_01445
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Entry
A3Q40_01445 CDS
T05182
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhu
Rhodococcus sp. PBTS 1
Pathway
rhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q40_01445 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhu03019
]
A3Q40_01445 (rnj)
Messenger RNA biogenesis [BR:
rhu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3Q40_01445 (rnj)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AMY18835
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Position
1567500..1569347
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AA seq
615 aa
AA seq
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MTRPPRRRSASRRAGPPAPPTAPPASRPAASAPRVPQNSAATQRPDSRSTVDHSGRLGTP
PKAPKKGLRVVALGGIGEIGRNMTVFEHQGKLLIVDCGVLFPEDQQPGVDLILPDFRHIE
NRMDDVVALVLTHGHEDHIGAVPFLLRLRPDIPVIGAKFTLALLAAKCREHRQRPNLVEV
REGDSTQHGPFELEYFAVNHSIPDALAVAIRTDAGVALHTGDIKLDQLPLDGRLTDLGGF
ARLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKAKNRVIVASFASHVHRIQQV
IDVAARYGRKVAFVGRSMVRNMAIAQELGYLTVPDGVEVDMDTATKLPDDRLVLISTGSQ
GEPLSALSRMARGEHRQINVRADDLVVLASSLIPGNENSVFAVVNGLAKRGAKVITQQSA
KVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAAATGVPEDRIVLAEDGVV
VDMVDGLAKVVGQVPVGHVYVDGLSVGDVGDSTLSDRLVLGEGGFIAITMAVDSATGRSA
GTPEVSGRGFSDDPAALEEAAKLVEAELVRLAGEGVKDTHRIAQAVRRVVGRWVADKYRR
RPMIVPTVLEVNTDQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaccgccccggcggcgatccgcctctcgacgcgccggcccgccggcgccgccg
acggcaccccccgcgtcccggccggcggcgtccgcgccgcgcgtcccgcagaactctgcg
gcgacgcagcgtccggattcgcgcagcacggtcgaccacagcggccgtctcggcaccccg
cccaaggcccccaagaaggggttgcgcgtcgtggccctcggcggcatcggcgagatcggc
cgcaacatgacggtcttcgagcaccagggcaagttgctcatcgtcgactgcggtgtgctg
ttccccgaggatcagcagcccggtgtcgatctcatccttcccgacttccggcacatcgag
aaccggatggacgacgtggtcgccctcgtgctcacgcacgggcacgaggaccacatcggc
gccgtcccgttcctgctgcgcctgcggcccgacatcccggtgatcggcgcgaagttcacc
ctcgcgctgctcgccgcgaagtgccgcgagcatcggcagcggcccaacctggtggaggtc
cgggagggcgattccacccagcacgggccgttcgagctggagtacttcgcggtcaatcac
tcgattcccgacgccctggccgtcgccatccgcaccgatgcgggtgtggcgctgcacacc
ggcgacatcaagctcgaccagcttcccctcgacggccggctcaccgatctcggcggattc
gcccgcctcggcgacgagggcgtcgacctgttcctggtcgactccaccaacgccgaggtg
ccgggcttcgtgacccccgagcgcgagatcggcggcgttctggacacggtgatcggcaag
gcgaagaaccgcgtcatcgtggcgtcgttcgcctcgcacgtgcaccgcatccagcaggtc
atcgacgtcgccgcccgctacggccgcaaggtcgccttcgtgggccgctccatggtgcgc
aacatggcgatcgcgcaggagctcggctacctcacggtgccggacggcgtcgaggtcgac
atggacaccgccaccaagctgcccgacgaccggttggtgctgatctccaccggctcgcag
ggcgaaccgctctcggccctgtcccgcatggcgcgcggtgagcaccgtcagatcaacgtg
cgcgccgacgacctcgtggtgctggcctcgtccctcatccccggcaacgagaactccgtg
ttcgccgtcgtgaacggtctggccaagcgcggcgccaaggtgatcacgcagcagagcgcc
aaggttcacgtctccggccacgcgtcggccggcgaactgctctacctctacaacgcggtg
cggccgaccaatgcgatgccggtgcacggcgagtggcgtcacctgcgggcgaacgcggca
ctcgccgccgcgacgggcgttccggaggaccgcatcgttctcgcggaggacggcgtcgtc
gtcgacatggtcgacgggctggcgaaggtcgtcggtcaggtccccgtcggccacgtctac
gtggacgggctctcggtcggcgacgtgggcgactcgacgctctccgatcgtctggtcctc
ggtgaaggcgggttcatcgccatcaccatggcggtcgactcggccaccggtcggtcggcc
ggaaccccggaggtctccgggcgcggcttctccgacgacccggccgccctcgaggaggcc
gcgaagttggtcgaggccgagctggtgcgtctcgcgggcgagggtgtcaaggacacgcat
cgcatcgcgcaggccgtccgccgagtcgtcgggcgttgggtggcggacaagtaccgtcgt
cgccccatgatcgtgccgacggttctcgaggtgaacaccgaccagtga
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