Rhodococcus sp. PBTS 1: A3Q40_02372
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Entry
A3Q40_02372 CDS
T05182
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rhu
Rhodococcus sp. PBTS 1
Pathway
rhu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A3Q40_02372 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rhu03000
]
A3Q40_02372 (alkA)
03400 DNA repair and recombination proteins [BR:
rhu03400
]
A3Q40_02372 (alkA)
Enzymes [BR:
rhu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
A3Q40_02372 (alkA)
Transcription factors [BR:
rhu03000
]
Prokaryotic type
Helix-turn-helix
AraC family
A3Q40_02372 (alkA)
DNA repair and recombination proteins [BR:
rhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A3Q40_02372 (alkA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
DUF8055
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
AMY19743
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All DBs
Position
2586818..2587738
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AA seq
306 aa
AA seq
DB search
MVTAPRWTTTEADLDVTEPYDVRWMSWFLAGHAVPGMETVVDGTYRRSLRLAHGPAVVSC
RLDRRRGGTVLHVAVRTADDRNVPDALDRVRLLYGTDVDSADADAVLAADPTLAPSVAEA
PGIRVPGSVDPSETLLRTMIGQQISLGAAATHTARLVAALGDPVGDDAGAPEHGIVRLFP
APAAVADKGATVLTGPARRVTAIAETARRLADGAVELHRGRPATEQEADLLALRGVGPWT
ARYVSMRVQGDPDVLLDTDLVVRQGAALLGVDLRESGRWSPWRSSASMHLWRVALLDRGA
YPAATG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtggtgaccgcaccgcgctggaccaccaccgaggccgacctcgacgtcaccgagccgtac
gacgtccggtggatgagctggttcctcgccggtcacgccgttccgggcatggagacggtg
gtcgacgggacctaccggcgctcgctgcgcctggcccacggtccggccgtggtgtcgtgt
cggctcgaccggcgccggggtgggacggtcctgcacgtcgccgtccgtaccgcggacgac
cggaacgtcccggacgctctggaccgggtgcgcctgctctacgggaccgacgtcgattcc
gccgacgccgacgcggtgctcgcagcggatccgaccctcgctccctcggtcgcggaggcg
cccggtatcagggtccccggatccgtggatccgtcggagactctgctgcgcaccatgatc
gggcagcagatctccctcggcgccgcggccacccacaccgcgcggctggtcgcggcgctc
ggcgacccggtcggtgacgacgccggggctcccgagcacggcatcgtccgcctcttcccc
gcccccgctgccgtggccgacaagggcgcgaccgtcctgaccgggccggcgcggcgggtc
accgccatcgccgagacggcgcgacgactcgccgacggcgcggtcgaactgcaccgcggg
cgcccggcgacggaacaggaggccgacctgctcgcgctccgcggcgtcggaccgtggacg
gccaggtacgtgtccatgcgtgtccagggcgatcccgacgtgctgctcgacaccgacctc
gtcgtgcggcagggcgctgcgctgctgggggtggatctccgcgagtcggggcgttggtca
ccgtggcgctcgtcggcctcgatgcacctgtggcgggtggctttgctcgaccggggcgcc
tatccggccgcgaccgggtga
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integrated database retrieval system
