Rhizobium sp. S41: BA939_03570
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Entry
BA939_03570 CDS
T05451
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhv
Rhizobium sp. S41
Pathway
rhv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BA939_03570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhv03400
]
BA939_03570
Enzymes [BR:
rhv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BA939_03570
DNA repair and recombination proteins [BR:
rhv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BA939_03570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ANV23101
LinkDB
All DBs
Position
1:complement(723353..726850)
Genome browser
AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVSSADTPLSIGNVPAGMEALLLAEMARAGTSVAYVMSDGQRIADLEQILGF
VAPDIPVMTLPAWDCLPYDRVSPSADTSARRLAALAGLISHAKKPHPAIVLVTVNAMLQK
MAPRDIIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEKLETAFDYLKGFRIVTDHTAREAAKERSKL
VLDYYEARRASGETKGSTQGAPYKPVSPGQLYLNGKDFDTALSAVNAVRLTPFNEQDSEG
RPVATLDAHVGPRWARQPTEGESEERVNVFALAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVTSLKEVEKLGKGEAASAVLSLEAGFETGNLAVIGEQDILGDRMVR
RSKRRKRGADFISEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PELIAPDGLYDEFAARFPYDETEDQLNAIEAVREDLAAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVA
DGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTTAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEQVQDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNR
DLPTPEKRLTGAAMIMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtgtcgtcggccgatacgccgctgagcattgga
aacgtgcccgcaggcatggaggcgctgctgcttgccgagatggcgcgcgcaggcacctcg
gttgcctatgtgatgtcggatggccagcgcatcgccgatctcgaacaaattctcggcttt
gttgcgcccgatattccggtcatgacgctgccggcctgggactgccttccctatgaccgc
gtgtcaccaagcgccgacacgtcggcgcgtcgcctggcggcgcttgccggtctcatcagc
cacgcgaagaaaccgcatccggccatcgtgcttgtcaccgtcaacgccatgctgcagaag
atggcgccgcgcgacatcatcgaaagccttggcttctccgccagacccggcaaccagatt
cgcatggaggatattgccgcgcggctggagcgcaacggtttcgaccgggttgcgacggtg
cgcgaagtgggcgagttcgccgtgcgcggcggtattctcgatgttttcgtgccgggcacc
gaggagcctgtgcggctcgatttcttcggcgatacgctggaaagcatccgtaccttcgat
ccggccagccagcggaccatcggccaggcgcgctcgctcgatctgaaccccatgagcgaa
gtgacgctgacgcccgatacgatcagccggtttcgtaagaattatctctcgctgttcggt
gcggcgacgcgcgacgatgcgctttatcaggccgtttccgagggccgccgttatgccggc
atggagcactggctgccgctgttttacgagaagctggagaccgccttcgattatctgaag
gggttccgcatcgtcacggatcacacggcacgcgaggcggccaaggagcgctccaagctg
gtgctcgattattacgaggcgcggcgcgcttccggtgagacgaagggatcgacgcagggt
gcgccctacaaacccgtgtctcccggccagctttatctcaacggcaaggatttcgacacg
gccctttctgccgtcaatgcggtgcgtctgacgcccttcaatgagcaggatagcgagggg
agacccgtcgccacgctggacgcgcatgtcggcccgcgctgggcgcggcagccaaccgaa
ggcgaaagcgaagagcgggtcaatgtctttgccctggctgtgaaacacatagccgagcgc
cgcgccaagggctggaaggtgctgataacaggctggtcggaaggctcgctcgaccggttg
ctgcaggtgctgaacgagcatgggcttgagaagatcaagccggttacctcgctgaaagag
gtggagaagcttggcaaaggcgaggccgcctccgcggtgctgagccttgaagccggtttc
gaaaccggaaatcttgccgttatcggcgagcaggacattctcggcgaccgcatggtgcgg
cgctccaagcgccgcaagcgcggtgcggatttcatttcggaagtggccggtctggacgag
ggctcgctcgtcgttcatgccgaacacggcattggtcgttttgtcggcctgcagaccatc
gaggcggcgggcgcaccgcgcgcctgtctcgaactgcattatgccgatgacgccaagctg
tttttgccggttgaaaacattgatctcctctcgcgttacggctcggacgcggcagaggca
acgctcgacaagctcggcggcggcgcatggcagatgcgcaaggccaagctcaagaagcgc
ctgctcgacatggccgatgagcttatccgcatcgcagcggcgcgtctcgtgcgccatgcg
ccggaactcattgcgccggacgggctctatgatgagtttgctgcccgtttcccctatgat
gaaaccgaggaccagctgaacgccatcgaggcggtgcgggaggatctcgcggccggccgg
ccgatggaccgtctcatctgcggcgacgttggcttcggcaagaccgaagtggcgctgcgc
gccgccttccttgccgccatgaatggcgtgcaggtggctgtcgtggtgccaacaacgctg
ctcgcacgccagcatttccggactttctcggagcgtttccgcggattgcccatccgtgtg
cagcaggcttcgcgtctcgtcggctccaaggaactggcgctgaccaagaaggaagttgct
gacggaaagaccgatatcgtcgtcggcacgcatgcgctgctcggtgcgggcatcagcttt
gccaatctcggcctactcatcatcgatgaggagcagcatttcggcgtcaagcacaaggag
cggctgaaggagctgaaaagcgatgtgcatgtgctgacgctatcggcgacgcccattccg
cgcaccttgcagctcgccatgaccggggttcgcgaactgtcgctcatcaccaccccgcct
gtcgaccgcatggcggtgcgcactttcatctcgccgtttgacccgctcgtcattcgtgag
acgctgatgcgtgagcattatcgtggcggccagagtttctacgtttgtccgcggcttgcc
gatctcgctgatatccacgccttcctgcaatcggatgtgccggaactgaaggtggcggtg
gcgcatgggcagatggcggcgggcgagctggaagacatcatgaacgccttctacgacggc
aaatatgatgttctgctgtcgaccaccatcgtcgaatccggccttgacgtgccgaccgcc
aatacgctgatcgtgcatcgcgccgatatgttcggtcttgcccagctctaccagctacgc
ggccgcgttggccgctccaaggttcgcgccttcgcgctcttcaccctgccggtcaacaag
gtgctgaccacgactgccgagcgccggcttaaggtgctgcaatcgctcgatacgctcggc
gccggcttccagctggcgagccacgatcttgatattcgtggtgcgggcaatctactcggg
gaagaacagtccggccatatcaaggaagtcggtttcgagctttatcagcagatgctggaa
gaggctgtcgccgaagtgaagggtgacgagcaggtgcaggatagcggctggtcgccgcaa
atctcggtcggcacatccgtcatgatcccggaagattacgttcccgatctgcatcttcgc
atgggcctttaccgccggcttggcgagcttgccgatatcagcgagatcgacggtttcggc
gctgaaatgatcgaccgtttcggcccgctgccgaaagaagtgcagcatcttctcaagatc
gtctacatcaagtcgctctgccgcattgccaatgtcgagaagctggatgccgggccgaag
ggcgttgtcgttcagttccgcaacaaggaattcccgaacccggcggcgcttgtcggttac
attggcaagcagggatcgatggcgaagatccgtcccgatcacagcctgttcctcaaccgc
gatctgccgacgccggaaaagcggctgacgggtgcggcgatgatcatgacgcagctggcg
gagctggctcggtcgtag
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