Rhizobium sp. S41: BA939_04805
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Entry
BA939_04805 CDS
T05451
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhv
Rhizobium sp. S41
Pathway
rhv03420
Nucleotide excision repair
rhv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BA939_04805
03430 Mismatch repair
BA939_04805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhv03400
]
BA939_04805
Enzymes [BR:
rhv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BA939_04805
DNA repair and recombination proteins [BR:
rhv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BA939_04805
MMR (mismatch excision repair)
Other MMR factors
BA939_04805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
Peptidase_M13
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ANV25127
LinkDB
All DBs
Position
1:956900..959374
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AA seq
824 aa
AA seq
DB search
MSNSFDDMPFFDEEPVAPRRATNNAPSENGGGLGIAARAMAARDQTRAAPDYLSGLNPEQ
RDAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKERI
GVLVGGAVEGMPWLGTFHSIGVKLLRRHAELVGLKSDFTILDTDDVVRLIKQLIQAEGLD
DKRWPAKQFAGMIDGWKNKGLTPPDIPEGDSRAFANGKGRELYTAYQNRLKTLNACDFGD
LLLHPISIFRRHTDILKEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRAKGEPQNVCCVG
DDDQSIYGWRGAEVDNILRFDKDFPGAKVIKLERNYRSTEHILGAAGHLIAHNEGRLGKT
LFTERSSPDDEKVVVHAAWDSEEEARAVGEEIEQLQRKGHLLNDMAILVRASFQMREFED
RFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGDTTIRN
LHDYARARDIPMLAAAADIIETDELKPKARKALFDVVQDFRRWQGLLENTEHTTLAEQIL
DESGYTAMWQADKTAEAPGRLENLKELIRSMEAFESMRGFLEHVALVMDAEQNENLDAVS
IMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRSGLEEERRLAYVGITRAKKLCHIW
FVSNRRIHGLWQSTLPSRFLDELPPAHVDVAASDSNYGGYGGRGGYGQSRFDKADPFANT
YSTPGWKRAQQNRSDATRDNWGTRSGHAVERIGYGESGPRTRTIDGELVAKSVADTPSRF
FVGDRVFHIKFGNGNIAAIEGNKLTIDFDRAGQKRVLDGFVEKV
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacagttttgacgatatgccgttcttcgatgaggaacccgtggcgccgcgcagg
gcgacgaacaatgccccttcggaaaacggcggcgggcttggcattgccgcccgcgccatg
gctgcgcgcgatcaaacgcgtgccgcacccgattatctttccggcctcaacccggaacaa
cgcgatgccgtggaaacgctggacgggccggttctcgtcctcgccggcgccggcaccggc
aagacccgtgttctgacaacccgcattgcccatattctcgcaacgggccgggcctatccc
agccagatccttgccgtgaccttcaccaacaaggccgcccgcgagatgaaggaacgcatc
ggcgttctcgtcggcggcgcggtcgagggcatgccctggctcggcacgttccactccatc
ggcgtcaagctgttgcgtcgtcacgccgaactcgtcggcctgaagtcggatttcaccatt
ctcgatacggatgacgtggtgcggctgatcaagcagctcattcaggccgaaggtctcgat
gacaagcgctggccggccaaacagttcgccggcatgatcgacggctggaagaacaagggc
ctgacgccgccggatattcctgaaggagacagccgcgccttcgccaatggcaagggccgc
gagctctataccgcctatcagaaccggctgaaaacgttgaacgcctgcgatttcggcgat
ctgctgctgcacccgatcagcatcttccgccgccatacggatattctgaaggagtaccac
cagaagttccgttacattctggtggacgaatatcaggacaccaacacggcgcaatatatg
tggctccggctcttggcccagcgcgccaagggcgagccgcagaacgtctgctgcgtgggt
gacgacgaccagtcgatctatggctggcgcggtgctgaagtcgacaatatcctgcgcttc
gacaaggattttcccggcgccaaggtcatcaagctcgaacgcaattaccgctccaccgag
catattctcggcgcggctggccacctcatcgcgcataatgagggacgcctcggcaagacg
ctgtttaccgaacgcagcagccctgacgacgaaaaggtcgtggtgcatgctgcctgggat
tccgaggaggaagcccgcgcagtcggcgaagagatcgagcagcttcagcgcaagggtcac
ctgctgaacgacatggcgatcctcgtccgcgcctccttccagatgcgcgaattcgaagac
cgttttgtcacgctcggcctcaattaccgcgtcatcggcggcccgcgcttttatgagcgc
ctcgaaatccgcgatgccatggcctatttccgcctcgtctgccagccggccgacgatctc
gccttcgagcggatcgtcaatacgccgaagcgcggccttggcgatacgacgatccgcaac
ctgcacgactatgcgcgtgcccgcgacattccgatgctggcggcagcggccgacatcatc
gaaaccgacgagctgaagccgaaggcccgcaaggcgctgttcgatgtggtgcaggatttc
cgccgctggcagggtctgctcgaaaacaccgagcacaccacgcttgccgagcagattctc
gacgaaagcggctacaccgccatgtggcaggccgacaagacggccgaagcgcccggacgc
cttgagaacctgaaggaactcatccgctcgatggaagcctttgaaagcatgcgcggtttc
ctcgagcatgtcgcccttgtcatggatgccgagcagaacgaaaatctcgatgccgtctcc
atcatgacgctgcattctgccaagggtctggaattcgacaccgtcttcctgcccggctgg
gaagaaggcctgtttccgcaccagcgggcgctggatgaaggcggccgctccggtctggag
gaagaacgtcgtcttgcctatgtcggcattacgcgtgccaagaaactctgccatatctgg
ttcgtctcgaaccgccgtattcacgggctgtggcaatccaccctgccctcgcgcttcctg
gatgaactgccgcccgcccatgtcgatgtcgcagcatccgacagcaattacggcgggtat
ggcgggcgtggtggctacggacaatcgcgtttcgacaaggccgatccctttgcgaacact
tattcaaccccgggctggaaacgtgcgcagcagaaccgtagcgatgccacccgcgacaac
tggggcacgcgctccggccatgcggtggaacgaatcggttatggcgaaagcggcccgcgc
acccgcaccatcgatggggaactggtggccaaatccgtggccgacacgccgtcaagattc
ttcgtcggcgaccgcgtcttccacatcaagttcggcaacggcaatatcgctgccatcgag
gggaacaagctcaccatcgacttcgaccgcgccggccagaagcgcgtgctggatggattt
gtggaaaaggtttga
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