Rhizobium sp. S41: BA939_05270
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Entry
BA939_05270 CDS
T05451
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rhv
Rhizobium sp. S41
Pathway
rhv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BA939_05270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhv03021
]
BA939_05270
Transcription machinery [BR:
rhv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BA939_05270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Relaxase_C
DUF5856
Motif
Other DBs
NCBI-ProteinID:
ANV23402
LinkDB
All DBs
Position
1:complement(1061806..1063860)
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AA seq
684 aa
AA seq
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MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEDAEEAAGGDDDGDSDGDDSEGGELAPSSGTALATAKKKE
PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRD
ELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRKLRAPTGDED
VTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEA
RLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLR
LAESYGVKRDSFLEQYHGAELDPNWMKSIANLAARGWKEFAREESNTIREIRQEIQNLST
ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaagtcaaagaaaacgaagaagcagaaaacgaacgcgacggtgcgacggac
ggcccgcttctcgacctttcggatgacgcggtcaagaaaatgatcaaggccgccaagaag
cgcggctatgtgacgatggacgagctgaattccgtcctgccgtccgaagaggtgacctcc
gagcagatcgaagacacgatggcgatgctgtccgacatgggcatcaatgtgatcgaggac
gaggatgccgaggaagccgccggtggcgatgacgacggcgattccgacggtgacgattcc
gagggtggcgaacttgcgccttccagcggcaccgcgcttgcgaccgccaagaagaaagaa
ccaaccgaccgcaccgacgaccccgtgcgcatgtatctgcgcgagatgggttctgtcgag
cttctgtcgcgcgaaggcgaaatcgccatcgccaagcgcatcgaggctggccgcgagacg
atgatttcgggcctgtgcgaaagcccgctgacgttccaggcgctgatcatctggcgcgac
gaactcaacgaaggcaccacgctgctgcgcgagatcatcgatctcgaaacgacctattcc
ggcccggaagccaaggctgcgccgcagttccagagcccggaaaagatcgaggccgaccgc
aaggccgccgaagaaaaggaaaagacccgcaagctgcgtgctccgaccggtgacgaggat
gtcaccgatgttggtggtgacggcctgccgccggaagaggaagaagaagacgacgacgag
tccaatctttcccttgccgcgatggaagccgaactgcgtccgcaggtcatggaaacgctc
gataccattgccgacacctacaagaagctgcgcaagcttcaggatcagcaggtggaagcg
cgtctggcctgcaccggtacgctctcttccggccaggagcgccgttacaaggaattgaag
gatcagctgatcacggccgtgaagtcgctttcgctgaaccagaaccgcatcgacagcctt
gtcgagcagctctacgacatttccaagcgtctgatgcagaacgaaggccggctgctgcgc
cttgccgaatcctatggcgtcaagcgcgacagcttcctcgagcagtatcacggtgcggaa
ctcgatccgaactggatgaagtcgatcgccaatctggccgcccgcggctggaaggaattc
gcgcgcgaagaaagcaacacgatccgggaaatccgccaggagatccagaacctctccacg
gaaaccggcatttccatcgccgaattccgtcgcatcgtttcgatggtgcagaagggtgag
cgcgaagcgcgcatcgccaagaaggagatggtcgaggccaacctgcgtctcgtgatctcg
attgcgaagaagtatacgaaccgtggtctgcagttcctcgatctcattcaggaaggcaat
atcggcctgatgaaggcggtggacaagtttgaataccgtcgcggttacaagttctcgacc
tatgcgacatggtggatcagacaggcgatcacccgctcgattgctgaccaggcccgcacg
atccgtattccggtgcacatgatcgaaacgatcaacaagatcgttcgtacctcgcgccag
atgctgcacgagattggccgcgagccgaccccggaagaactagccgaaaagctggccatg
ccgctggaaaaggtgcgcaaggttctgaagatcgccaaggagccgatctcgctcgaaacc
cccgtgggtgacgaagaggattcgcatctcggtgacttcatcgaggacaagaacgcgctg
ctgccgatcgacgccgccattcaggcgaacctgcgcgaaacgacgacccgcgtattggcc
tcgctgacaccgcgtgaggaacgtgttctgcgcatgcgcttcggcatcggcatgaacacg
gaccatacgctggaagaggtcggccagcagttctcggttacgcgcgaacgtattcgccag
atcgaggcgaaggcgctgcgcaagctgaagcacccaagccgctcaagaaagctccgcagc
ttcctcgacagctaa
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