Rhizobium sp. S41: BA939_09005
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Entry
BA939_09005 CDS
T05451
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rhv
Rhizobium sp. S41
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhv03019
]
BA939_09005
Enzymes [BR:
rhv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BA939_09005
Messenger RNA biogenesis [BR:
rhv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BA939_09005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_30
ResIII
AAA_19
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANV24069
LinkDB
All DBs
Position
1:complement(1874309..1876795)
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AA seq
828 aa
AA seq
DB search
MTRTPAPIKTDLPELPVSAVLAEIAGALSGARRAVLSAPPGAGKTTLVPIYLLQQRWRGD
GKIILLEPRRLAARAAAGRMADLLHEDVGDTVGYRMRLDNRISSKTRIEVVTEGVFARMV
LDDPELSDVSTVIFDEFHERSLDGDFGLALALDVQTGLRDDLRILVMSATLDVERISALM
GGAPVIQSLGRTFPIDIRYEERWQGMPVDEKVARAIREAHASETGSILAFLPGQSEITRT
AARLEGHFPDDTDIIPLYGNLSQKEQDAAIKPAASGRRKIVLATSIAETSITIDGVRVVV
DSGLQRLPVFEPATGITRLETVRASRASADQRAGRAGRTEPGVAIRLWHQGQTAALSAFT
PPQILASDLAGLALDLAHWGVHDPSSLAFLDAPPEAALKESVALLKNLGALDESGALTSQ
GRLMRGLSLPPRLAAMVIAAAGEGSGKKAAMLAVMLTEQGLGGNDIDLDDRLRRFLADRG
ERAQAARKLAFRLLDTVGDMPAANDLPSEAGPLLLHAYPDRIALQRGARGRYVMANGRGA
ELAETERLAASRMLVVADITGRAAQPRILAAAGIDRADIEERMPHLIVQQDQLLFDKASG
QARARRVVRLGAIILDETPLPRPDGEQAAQALANGVRDFGIGILPFSKETAQLRDRIGFL
NASIGEPWPDVSDQALLSRLDEWFIPFQHGVRSLQDIRPGSLSEGILSLVPHEVARDLGR
LAPTHFEAPTGQRHPIRYDASEPTLSIRVQELFGLKAHPAIAQGRLPLLLELTSPAHRPI
QTTRDLPGFWAGSWKDVRADMRGRYPRHPWPEDPADALPTSRAKPRGT
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaccagaacaccagcgccaataaagaccgacttacctgaacttcccgtcagcgctgtt
ctcgcggaaatcgcaggtgccttgtcgggggcgagacgtgcggttctctcggcccctccc
ggggcgggcaaaacgacgctggtgccgatttatctcctacagcagaggtggcggggcgac
ggaaagatcattcttctcgagccacgccggcttgcagcccgcgcagcggcgggacgcatg
gccgatctcctgcatgaagatgtcggtgacaccgtcggataccgcatgcggctcgacaat
cgtatttcatcaaaaacccggatcgaggtggtaacggaaggcgtatttgcccggatggtt
ctggatgatcccgagctttccgatgtctcgacggtgatattcgacgaatttcatgagcgc
tcgcttgacggagatttcgggctggcgctggccctcgatgtccagaccggtttgcgtgac
gacctgcggatcctcgtcatgtccgcaactctcgacgttgaacgcatcagcgcgcttatg
ggtggcgctccggtcattcaaagtcttggaaggacctttccgatcgacattcgttacgag
gaacgctggcagggcatgccagtcgatgaaaaggtggcaagggcgattagggaagcccat
gcatcggaaacagggtccattctggccttcctgcccggacagtcggaaattacccggacg
gctgcaaggctggaaggacatttccccgacgatacggatatcatcccactttacggcaat
ctttctcagaaggagcaggacgccgcgatcaagccggcagcctccgggcgacggaagatt
gtccttgcaacatcgatagcggagacctcgataaccatcgatggtgtgagggtcgtggtc
gacagcggtctgcagcggttgccggttttcgaaccggcgaccggcatcaccaggcttgag
accgtgcgggcatcacgcgcctcggccgatcagcgcgccggtcgcgccggccgaaccgag
cccggtgttgccattcgcctctggcatcaggggcagacggcagcactcagtgcatttacg
ccgccgcaaattttggcgagcgatcttgccggccttgcgctcgatcttgcccattggggt
gttcatgacccctcgtctctcgcctttctggacgcgccacctgaggctgccctcaaagaa
tcggtcgcactcctgaaaaatcttggcgcccttgatgaaagcggcgcactgacgtcgcag
ggccggctgatgcgaggcctctccctgccgccgaggctcgcagcgatggtgattgcagcc
gcaggcgaaggctcgggaaaaaaggcggcgatgcttgcggtcatgctgacggaacagggc
ctgggcggaaatgatatcgatctcgatgacagactgcggcgctttcttgccgatagaggt
gaaagggcgcaggcggcgcgcaagctggctttccgccttctcgacacagtcggtgatatg
ccggcggcaaacgacctgccgagcgaggcaggaccgcttctgctgcacgcatatccggac
aggatcgcgcttcagcgcggcgcgcgcggccggtatgtcatggcgaatggccgcggggct
gaactggctgaaacggagcggctggcggcgagccgaatgcttgttgtcgctgacattacg
ggtcgggccgcgcagccgcgcatccttgcggcggccggcatcgacagggccgatatagaa
gagcgtatgccacatcttatcgttcagcaggatcagctgctgttcgacaaggcgagcgga
caggcgcgggcgcgtcgggtagtgcgtctgggcgccatcattctggacgaaacgcccctg
ccccgtcccgacggtgagcaggcagcgcaagcgctcgccaacggcgttcgggatttcggc
atcggcatacttcctttttcgaaagagaccgcgcaattgcgcgatcggatcggatttctg
aatgccagcatcggagagccctggccggatgtcagcgaccaggcgttgctttcgcggctg
gacgaatggttcatcccttttcagcatggcgtccggagccttcaggacatccggcccggc
agtctttccgaagggattctgtccctggtgccacatgaggtcgcccgagatctcggcagg
ctggcgccgacccatttcgaagcgccgacgggccagcggcaccccatccgctatgacgcc
agcgagccgacgctttccattcgcgtgcaggagcttttcgggctgaaggcgcacccggcc
attgcgcaggggcggttgccgctgctcctggaattgacgtcgccggcgcacaggccgata
cagacgacgcgtgatcttcccggcttctgggcgggatcgtggaaggacgtgcgggcagat
atgcgtggtcgctatccgcgtcatccgtggccggaggatcccgccgatgccctgccgacc
agccgtgcgaaaccgcgcggaacgtga
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