Rhizobium sp. S41: BA939_10285
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Entry
BA939_10285 CDS
T05451
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhv
Rhizobium sp. S41
Pathway
rhv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BA939_10285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhv03400
]
BA939_10285
Enzymes [BR:
rhv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BA939_10285
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BA939_10285
DNA repair and recombination proteins [BR:
rhv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BA939_10285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ANV24285
LinkDB
All DBs
Position
1:2138147..2139043
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AA seq
298 aa
AA seq
DB search
MPELPEVETVRRGLAPAMEGARVRKLHLGRPDLRFPFPEDFAELIEGKTIISLGRRAKYL
LIELEDGLTIVSHLGMSGSFRVEAEADAEGSIPGVFHHPRSKDGKHDHVVFYLDKGEERI
CVIYNDPRRFGFMHLVERSKLDLYPAFAELGPEPTGNTLSADYLASRFDGKSQPLKSTLL
DQKVIAGLGNIYVCEALWRAHLSPLRAAGTLVTKGGKPTAKLVYLTEKIRDVIADAIAAG
GSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGCRGTVERVVQAGRSTFYCAACQK
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccagaagtcgaaaccgtcagacgcggccttgctcccgccatggaaggg
gcaagggttcgcaagctccatctcggccgccccgacctgcggtttccgtttccagaggat
ttcgcggagcttatcgaggggaagacaatcatctcgctcggaaggcgggcaaaatatctt
ctgatcgagctggaggacgggctgacaatcgtgtcccatctcggcatgtccggctctttc
cgcgtggaagcggaagccgatgcagaaggcagcatacccggcgtgttccaccatccccgc
tcgaaggacggcaagcacgaccacgtcgtcttttatctggataaaggcgaagagcgcatc
tgcgttatatataatgatccgcgtcgcttcggcttcatgcatctggtggagcgcagcaag
ctcgatctttatcccgcctttgcggaacttggcccggagccaacaggcaatacgctgagc
gcggattatctcgcgagccggttcgacggtaaaagccaaccgctgaaaagcacgctgctg
gaccagaaggttattgccggcctcggcaatatctatgtctgcgaggcgctgtggcgcgcc
catctttcccccctgcgtgccgccggaacgctggtaacgaaaggtggcaagcccacagcg
aagctcgtgtatctcacggagaaaatccgcgatgtcatcgccgatgccatcgccgccggg
ggctcatcattgcgcgaccacatacagacggatggaacgcttggttatttccagcattcc
ttttcggtctacgatcaggaggggcagccttgccgtacccccggctgcaggggtacggtt
gaaagggtggtgcaggctggccgctccaccttttattgcgccgcctgccagaaatga
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