Rhodococcus sp. WMMA185: BFN03_03100
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Entry
BFN03_03100 CDS
T04814
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhw
Rhodococcus sp. WMMA185
Pathway
rhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFN03_03100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhw03019
]
BFN03_03100
03009 Ribosome biogenesis [BR:
rhw03009
]
BFN03_03100
Enzymes [BR:
rhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BFN03_03100
Messenger RNA biogenesis [BR:
rhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFN03_03100
Ribosome biogenesis [BR:
rhw03009
]
Prokaryotic type
rRNA helicases
BFN03_03100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOW92023
UniProt:
A0A1D8T3C7
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All DBs
Position
725101..726867
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AA seq
588 aa
AA seq
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MSDSERDPEPPNFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGNDVVGLAQTGTG
KTAAFAVPILSRIDLAQKSPQALVLAPTRELALQVAEAFGKYSAHIPGVHILPIYGGQSY
GVQLSGLRRGAHIVVGTPGRVIDHLEKGTLDLTKLSYLVLDEADEMLKMGFQEDVERILS
DTPEHKQVALFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDA
LTRVLEVEDFEAMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGV
IDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGQALLFVAPRERH
LLRAIEKATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLTSDNLALFRKMIEDYEQEHD
VPLADIAAALAVQSRDGEAFLMAPEPPPPPRRERPQRRFDDGPPARSRGAEGRSHGSAGQ
ELATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPAHLSRETLEA
LRRTRISGVLIQLQPDTGPPPGRPGRVGRDNRGGGKFQRDRDGRRNPR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatagcgagcgtgaccccgaaccccccaattttgccgacctcgacattgacgat
cgggtgttgaaggctctgtctgatgtgggctacgagtcgccctcgccgatccaggccgcc
accattccgccgcttctcgaaggaaacgacgtcgtcggactggcgcagaccggcaccgga
aagacggccgccttcgcggtgccgatcctgtccaggatcgacctcgcccagaagtcgccg
caggcacttgtcctcgcaccgacacgggagctggctctccaggttgcggaggcgttcggc
aagtactcggcccacattccgggcgtccatatcctgcccatctacggcggtcagagttat
ggcgtccagttgtcgggtctgcggcgcggcgcccacatcgtggtcggtacgcccggtcgt
gtgatcgaccacttggagaagggcacgctcgatctgaccaagctttcgtacctggtcctc
gacgaggccgacgaaatgctgaagatgggattccaggaggatgtcgagcgcatcctctcg
gataccccggagcacaagcaggttgctcttttctcggcgacgatgccgggggccatccgc
aagatctcgaagcagtacctgcacgacccggtcgagatcacggtgaagtccaagacgtct
acggcgtccaatatttcgcagcggtacgtccaggtggcgcaccagcgcaagctcgatgcc
cttactcgagttctcgaggtcgaggatttcgaggccatgatcatcttcgtgcgcacgaaa
caggccaccgaagatctcgccgagcggctgcggtcgcgagggttctcggccgcggccatc
aacggcgacatcgtgcaggcccagcgtgagcggaccatcggccagctcaagagcggcgtg
atcgacatcttggtggccacggacgtagccgcacgcggtctggatgtcgaccgcatctcc
cacgtcgtcaactacgacatcccgcacgacaccgagtcgtacgtgcaccggatcggccgc
accggtcgagccggacgggcgggccaggcgttgctgttcgtggcgccccgcgaacggcat
ttgctcagggcgatcgagaaggccacccgtcagcccctggccgagatgcagctgccgagc
gtcgacgacgtcaatgcgcaacgtgtggccaagttcggcgattcgatcaccgagagcctc
acctccgacaatctggcgttgttccgcaagatgatcgaggactacgagcaggagcacgac
gtgccgctcgccgacatcgctgcggcactggcagttcagtcccgtgacggtgaggcgttc
ctcatggcgccggaaccgccgcccccgccgcggcgtgagcgcccccagcggagattcgac
gacggcccgccggcgcgatcccgcggagcggaggggcggtcgcacggatcggcggggcag
gaactcgccacctaccggatcgcggtcgggaagcggcatcgtgtggtcccgggtgcaatc
gtcggcgccatcgccaacgagggtggcctacggcgtagcgatttcgggcacatcagtatc
cgacccgaccacagcctggtggagctaccggcccacctgtcccgcgagacgttggaggcg
ctccgtcgcacccgcatctccggggttctgatccaactgcagcccgataccggtccgccc
ccgggaaggcccggtcgcgtcggccgtgacaatcgcggtggcggcaagtttcagcgcgac
cgggacggcaggcgtaacccacgctga
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