Rhodococcus sp. WB9: FND50_11100
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Entry
FND50_11100 CDS
T11350
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhwb Rhodococcus sp. WB9
Pathway
rhwb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhwb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FND50_11100 (mfd)
Enzymes [BR:
rhwb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FND50_11100 (mfd)
DNA repair and recombination proteins [BR:
rhwb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FND50_11100 (mfd)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QDQ91303
UniProt:
A0A516WK95
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Position
2379449..2383096
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AA seq
1215 aa
AA seq
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MSSPLIAAEPSSDTPLAGLAKIALGDAVIAQVTEALGRHHLDIVAPAPARPFVAAALAER
THLLLVTATGREADDLTAELQEMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLA
RPDDRSYGAPLQVIVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRV
DMVGKRGEFAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLPELDIDAVIA
PPCRELLLTEDVRDRAAQLAVDNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLL
TDVLPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLKGDGIDL
GASAYRSLSQVRESAEATGLPWWTLSPLASGNGEELELAVTPAPQVRGSDDLLSELFVSL
RAHVTTGGRAVIVVAGAGTAHRVLERLREAEVPAAELAPGTEPPRGQVGVLRGSLHDGLV
FPGDDSTAGLVIVTEADLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIGR
FVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGS
DWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTV
ISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQT
FTERMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDVVVGTHRLLQTGIRWKDLGLVIV
DEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILT
YVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKSAQRIRELVPEARVVVAHGQMNED
TLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRE
RGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVA
GVGFDLYVRLVGEAVEAFRAAADGKPITTEDAPKEVRIDLPVDAHIPPDYVTSDRLRLEG
YRKLAAATELDGITAVVDELVDRYGPLPEEVRRLVSVAKLRLLAREYGLEEIAVVGTQLK
IAPMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVELLQYIADFV
VALDGKAAGSVVMEA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccccgctcatcgctgccgagccctcgtccgacaccccgctcgccggtctggcg
aagattgcgctgggcgacgcagtcatcgcacaggtgaccgaggcgctcgggcggcatcac
ctcgacatcgtcgcgcccgcacccgcccggccgttcgtggccgcggctctcgccgagcgc
acccatctgctgctggtcaccgcgaccggtcgcgaggccgacgacctcaccgccgaactg
caggagatgatcggcgacgccgtggcgcagttcccgtcgtgggagacgctgccgcacgaa
cggctgtcgccgagcgccgacacggtcggtcgccgcgtggaggtgctccgcagactcgcg
cgcccggacgaccgctcgtacggggccccgctccaggtcatcgtcaccaccgtccgttcg
ctggtgcaacccatggcccccggtctcggtgagatcgaacccgtcacgctgcgcgtgggt
gtcgagcacgacttcgacgggctgatccagcggctcgtcgaaatggcgtacacgcgcgtc
gacatggtgggaaagcgcggtgagttcgccgtccgcggcggcatcctggacctgttctca
cccaccgcggatcatcccgtgcgcgtcgaattctggggcgacgaggtcaccgagttgcgc
gcgttctccgtcgcggatcagaggtcgctgcccgaactcgacatcgacgccgtgatcgct
ccgccgtgccgcgaactgctcctcaccgaggacgtccgcgaccgcgccgcgcagctcgcg
gtcgacaaccaggccgacgccgcgctcgtcgagatgctcgacaagatgtcggcgggcatc
ccggtggaaggcatggaggcactgctgcccgtgctgcggccggggcaactgcagttgctc
accgacgtgctgcccgagagcgcacacgtgctgctgtgcgatccggagaagatccggacg
cgcgccaccgacctggtgcgcaccggtcaggagttcctcgaggcgtcgtggacggcggcc
tcgatcggcggcgccgccccgctcgacacctcggtgctgaagggtgacggcatcgatctc
ggagcctccgcctaccgctcgctcagccaggtccgtgaatccgcggaggccacgggcctg
ccgtggtggacgctgagcccgctcgcgtcgggcaacggcgaggaactggagctggcggtc
acgccggcaccgcaggtccgtgggtccgacgacctgctgtcggaactgttcgtgagcctg
cgcgcccacgtcaccaccggcgggcgcgccgtcatcgtggtcgcgggcgccggcaccgcg
catcgcgtgctcgagcgtctgcgcgaggccgaggtgcccgcggcggaactcgcgcccggc
accgagcccccgcggggccaggtcggggtgctgcgcggttcgctccacgacggcctggtc
ttccccggcgacgactccaccgccggactcgtcatcgtcacggaggccgatctcaccggc
aaccgggtggccgcggtcggcgacggcaagaggctgccggcgaagcgccgcaaccaggtg
gacccgctggccttgaccgccggggacatggtggtgcacgaccagcacggcatcggacga
ttcgtcgagatggtcgaacgcaccatcggcggcgcccgccgcgagtacctggtgatcgag
tacgccgccagcaagcgcggacacccgggcgaccgtctgttcgttccgatggagtcgctc
gaccagctgtcgcggtacgtcggcggcgagctgcccgcgctgagcaagctcggcggatcc
gactgggccaacaccaaacgcaaggcgcgcaaggcggttcgtgagatcgccggtgagctc
gtccagctgtacgcggcgcggcaggccgcacccggacatgcgttcggccccgacaccccg
tggcagaaggagatggaggacgccttcgcgttcaccgagacccacgaccagctgacggtc
ataagcgaggtcaaggccgacatggagaaggcggtcccgatggaccgcgtcgtcatcggc
gacgtcggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggccgtgcaggac
ggcaagcaggtggccgtcctggtgccgacgacgctgctcgctcagcagcacctgcagacg
ttcaccgagcgcatggccgcgttcccggtgacggtgcgcgggctctcccgcttcacggat
gcgggagactccaaggagaccatcgccggcatggccgacggcgagatcgacgtcgtggtc
ggcacgcaccggctgctgcagaccgggatccggtggaaggacctgggcctcgtcatcgtc
gacgaggaacagcgcttcggtgtggaacacaaggagcacatcaaggccctgcgcacccac
gtggacgttctcacgatgtcggccacgccgatcccgcgaacactggagatgagcatggcg
ggcatccgcgagatgtccacgatcctcacgccgccggaggaacggcaccccatcctcacc
tacgtcggcgcgtacgccgacaagcaggtggcggcggccatccgacgggaactgctccgc
gacgggcaggtgttctacgtccacaaccgggtcagctcgatcgacaagtcggcccagcgg
atccgcgaactcgtccccgaggcgcgggtcgtggtggcacacgggcagatgaacgaggac
accctggaacggaccgtgcagggcttctgggaacgcgactacgacgtgctggtgtgcacc
accatcatcgagacgggtctcgacatctccaacgccaacacgctcatcgtcgaacgcgcc
gattccctcggcctgtcgcagctgcaccagttgcgcggccgcgtcgggcggagccgggaa
cgcggctacgcgtacttcctgtacccgccggagaagccgctcaccgagacggcctacgac
cgcctcgcgaccatctcacagaactccgacctcggtgccggcatggcggtcgcgatgaag
gacctcgagatccgcggcgccggaaacgtgctgggtgccgagcagtccggtcacgtcgcg
ggtgtcgggttcgacctgtacgtgcggctggtgggggaagcggtcgaggcgttccgggcg
gccgcagacggcaagccgatcacgacggaggacgctccgaaggaggtccgtatcgacctg
cccgtcgacgcgcacatccctcccgattacgtcaccagcgaccgtctccggctcgagggg
taccgcaagctcgcggcggccaccgaactcgacggcatcacggccgtggtcgacgaactc
gtcgaccggtacggaccgctgcccgaggaggtccgccgactggtttcggtggccaagctg
cgcctgctggcccgcgagtacggactcgaggagatcgccgtggtcgggacgcagctgaag
atcgcgccgatggccctgcccgactcgaagcagttgcgtctcaagcggatctacccgagc
gcccagtaccgtgccaccaccggaatggtgcagctgccgctgccccgggcggggtcgggc
ggaatcggcgcggagcgggtgcgtgacgtggagttgctgcagtacatcgccgacttcgtg
gtcgcgctggacggcaaggctgccgggtccgtggtgatggaggcctga
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