Rhodococcus sp. WB9: FND50_23320
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Entry
FND50_23320 CDS
T11350
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhwb Rhodococcus sp. WB9
Pathway
rhwb03030
DNA replication
rhwb03430
Mismatch repair
rhwb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhwb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FND50_23320 (dnaE)
03430 Mismatch repair
FND50_23320 (dnaE)
03440 Homologous recombination
FND50_23320 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhwb03032
]
FND50_23320 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhwb03400
]
FND50_23320 (dnaE)
Enzymes [BR:
rhwb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FND50_23320 (dnaE)
DNA replication proteins [BR:
rhwb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FND50_23320 (dnaE)
DNA repair and recombination proteins [BR:
rhwb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FND50_23320 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QDQ93386
LinkDB
All DBs
Position
complement(5022465..5026001)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNVAKKQG
IKPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR
MPIFPVPEGETQGTWLRKEVMRGLDRRFPDGPPEEYLARADYEIGVILEMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHAC
AVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIK
ANRGIDLDLDTLALDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVA
GYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFAGYAFNK
SHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVLPPDVNE
SEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAACSKKVT
ESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESISSVFNV
KIPEEEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIKDGTQVTV
GGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFPQAYSVYGMDVTEDSVVLVKARVSI
RDDRISLIANDLAVPDLSAVGVAKPLAVSLPLRQCTKDKIGALRQVLTRHPGTSDVHVRL
IGGTEVTLWKVDDVLRVEPSSALMGDLKALLGPSCLSV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgtacatctgcacaatcacaccgagtactcgatgctcgacggtgcg
gccaaggtcggccccctgttcgaagaggccgagcgactggggatgtcggcggtcggcatg
accgaccacggcaacatgtacggcgccagcgagttctacaacgtggcgaagaagcagggc
atcaagccgatcatcggcatcgaggcgtacatcgcgcccgagtcccgcttcaacaccaag
cgtgtgctgtggggcgaccgcagccagaagtccgacgacgtctccggtagcggcgcgtac
acccacatgacgatggtcgcggagaacgcgaccggtctgcggaacctgttcaagctgtcc
tcgctcgcgtcgatcgagggccagctcggcaagtgggcgcggatggacgaagagctcatc
gccacccaccacgagggcatcatcgcgaccacgggatgtccgtccggtgagatccagacc
cggctgcgactcggccacgaccgcgaggcgctcgaggccgctgccaagtggcaggagatc
tggggcaaggacaacttcttcctcgagctgatggaccacggactgtcgatcgagcgacga
gtgcgtgagggcctgctcgagatcagcaagaagctcgagattccgccgctcgccaccaac
gactgccactacgtcaccaaggaagccgcggagaaccacgaggcgctcctctgcatccag
accggtaagacgttgtccgaccccacccggttcaagttcgacggcgacggctactacctg
aagccggccgcggagatgcgcgcgctgtgggacgaccaggtgcccggcgcgtgcgacaac
acactgctgatcgccgagcgggtccagtcgtacgacgacgtgtgggcgcaccacgaccgg
atgccgatcttcccggtccccgagggcgagacgcagggcacctggctgcgcaaggaggtc
atgcgcggactggaccgccggttccccgacggaccgcccgaggagtacctcgcccgcgcc
gactacgagatcggcgtcatcctcgaaatgggtttccccgcctacttcctcgtcgtcgga
gacctcatcaaccatgcccgggaggtcggcatccgcgtcggccccggccgaggctcggcg
gcgggttcgctcgtcgcctacgcgatgggcatcaccaacatcgaccccatcccgcacggc
ctgctgttcgagcggttcctgaaccccgaacgcgtctccatgcccgatatcgatatcgac
ttcgacgatcgccgtcgcggcgagatggtgcgctacgcgacggacaagtggggcagcgac
cgcgtcgcccaggtcatcacgttcggcaccatcaagacgaaggcggccatcaaggactcc
gcccgagtccagttcggccagcccggtttcgcgatcgccgaccagatcacgaaggcgctg
ccgccgccgatcatggccaaggacatctcggtgtccggcatcaccgacccgaaccacgaa
cgctacaaggaagcggtggaggttcgcgccctcatcgactccaacccggacgtcgcgaag
atctaccagacggccaagggactcgagggcctgatccgtaacgccggcgtccacgcctgc
gcggtcatcatgtcgtccgaaccgctgatggatgcgattcccgtgtggaagcgcgcccag
gacggcgccatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctgaag
atggacttcctcggactgcggaacctcaccgtcatcggtgacgccatcgacaacatcaag
gcgaaccgggggatcgatctcgatctcgacaccctcgcgctcgacgacccggccacgtac
gaactgctctcgcgcggagacactctcggcgtgttccagctcgacggcagcgcgatgcgc
gacctgctgcgccgcatgcagcccaccggtttcgaggacatcgtcgcggtgctcgcgctg
taccggcccggtccgatgggcatgaacgcgcacaacgactacgccgaccgcaagaacggg
cggcaagaggtcaaacccatccacccggaactcgaggagcccctgaaggagatcctggcc
gacacgtacggcctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
gggtactcgctcggacaggccgacattctccgccgcgccatgggtaagaagaagctctcg
gtgctggaggaggcgtatgccggtttccgcgagggcatgctcgccaacgaattctccgag
cccgccatcaaggcgctgtgggacaccatcctcccgttcgccgggtacgcgttcaacaag
tcgcacgccgccgggtacggcctggtgtcgttctggaccgggtatctcaaggccaactat
ccggccgagtacatggccggtctgctcacctcggtcggtgacgacaaggacaaggccgcc
gtctacctcgcggactgccgcaagatggggatcacggtgctgccgccggacgtcaacgaa
tcggaggtcaacttcgcctccgtcggtgaggacatccggttcggcatgggcgccgtccgc
aacgtcggcgctaacgtcgtgggctcgatcatcaaggcgcgcaaggagaagtccaagttc
gtcgacttctccgactacctcaacaagatcgacgccgccgcctgctccaagaaggtcacc
gaatcgctgatcaaggcaggcggattcgactcgctgggccatccgcgcaagggactcatg
ctcgtccacgccgacgccatcgacgcggtgatgggcaccaagaaggcggaggcgatcgga
cagttcgacctgttcggcggcgacgacgccgacgagtcgatctcctcggtgttcaacgtg
aagatccccgaggaggagtgggactcgaagcaccggttggcgctggaacgggaaatgctg
ggcctgtacgtgtccgggcacccgctcaacggcgtcgaacacgtgctgtcggcgcagtcc
gacaccgcgatcccgaccatcctcgaaggcgacatcaaggacggcacccaggtcaccgtc
ggcggcatcctcgcgtcggtgaatcggaggatcaacaagaacggtctcacctgggcgtcc
gcgcagctcgaggatctgaccggtggtatcgaggtgctgttcttcccgcaggcctactcg
gtctacgggatggatgtcacggaggactccgtcgtgctcgtcaaggcgcgcgtgtcgatc
cgtgacgatcggatctcactcatcgccaacgaccttgcggtgccggatctctcggcagtg
ggggtcgcgaagccgctggcggtcagtctgccgctgcgtcagtgcaccaaggacaagatc
ggcgcgttgcgtcaggtgctcacacgccatccggggacgtcggacgtgcacgtgcggttg
atcggcggcaccgaggtcacgttgtggaaggtggacgacgtgctccgggtggaaccgtcg
tcggcgttgatgggtgatctcaaggcgttgctcggaccgagctgcctgtccgtgtga
DBGET
integrated database retrieval system
