Rhodococcus sp. WB9: FND50_27365
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Entry
FND50_27365 CDS
T11350
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhwb Rhodococcus sp. WB9
Pathway
rhwb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhwb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FND50_27365 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhwb03400
]
FND50_27365 (recD)
Enzymes [BR:
rhwb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FND50_27365 (recD)
DNA repair and recombination proteins [BR:
rhwb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FND50_27365 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
SH3_13
NAT10_TcmA_helicase
AAA_22
TraI_hel_assoc_N
AAA_16
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QDQ94113
LinkDB
All DBs
Position
complement(5865775..5867643)
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AA seq
622 aa
AA seq
DB search
MTEVQVAQRGKGMLRVFNEAGVLAAADVHVALRLSALGGESSEDVVLATALAVRAVRSGS
VCLDLTRIREVTVDEESEVDLDALPWPDDGTVVEALRQSPLVTGGSAGPLRPLRLVDTAE
GGLLYLDRYFRQEATIRRVLDHRAVGHPLVDEQSLQEGLDALFRDQHDHGAPAPAPDRQR
IAAAVAATQWTSVVVGGPGTGKTHTVARVLALLTRQPGPGLRIALAAPTGKAAARLQESV
REQSDALGLPPDLTAMTLHRLLGWQRGRGSRFRYNANNHLPYDAIVVDETSMVSLTMMCR
LLEAVRPDTRLVLVGDPDQLTSVDAGAVLADLVARPVTGTENPVLARIVGDDLEAADDPL
EAALSAGERDRLRGGVVRLSRGRRFGGGIAQLAVAVRKGEPDEVMEILSSGFPEVSFHGP
EDLDALRADVVGTAAAVTGSAESGDALAALRHSEEHRLLCAHREGPYGVQWWARQAMEWI
GEATGQRLNPDRWYPGQPLMVTANDHETKIYNGDTGVIVRRDDDELVAAFVRGNEPFLLH
PTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGEASSMLTRELLYTAITRARKHVRIIGSE
DAVRAGVQRRVLRASGLRRAIP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggtgcaggtggcgcagcgcggcaaggggatgctgcgggtcttcaacgaggcc
ggtgtgctggccgccgcggacgtgcacgtcgcgttgcggttgtcggcgctcggaggcgaa
tcgtcggaagacgtcgtactggcgacggcgctggcggtgcgggcggtgcggtccggctcg
gtgtgcctggacctgacgcggattcgtgaggtgaccgtcgacgaggagtccgaagtcgat
ctcgacgcactgccgtggccggacgacggcacggtcgtcgaggcactgcggcagagcccg
ctggtcacgggtggttcggcgggtccgctgcgaccgctgcggctcgtcgacacggccgag
ggcgggctgctctacctcgaccggtacttccggcaggaagcgaccatccggcgggtactc
gaccaccgcgctgtcgggcatcccctcgtcgacgagcagtcgctgcaggaggggctggac
gcgttgttccgcgaccagcacgaccacggggcgccggccccggctccggaccggcagcgg
atcgccgccgcggtcgccgccacacagtggacgtcggtggtggtcggcggacccggaaca
ggcaagacgcacaccgtcgcccgggtgctggcgctgctgaccaggcagcccgggccgggc
ctccggatcgcgctcgccgcacccaccgggaaggccgcggcgcggttgcaggaatcggtg
cgcgagcagtccgacgcactcgggttgccgcccgacctgaccgcgatgacgctgcatcgg
ctgctgggctggcagcgcggacgtggtagccggttccgctacaacgcgaacaatcacctg
ccctacgacgcgatcgtggtcgacgagacgtcgatggtgtcgctgacgatgatgtgccgt
ctcctcgaggccgtccgcccggacacccgcctggtgctcgtcggcgaccccgatcagctg
acgtccgtcgacgcgggcgcggtcctggccgatctcgtggcccggccggtgacgggaacc
gagaatccggtgctcgcaaggatcgtcggcgatgacctggaggcagccgacgacccgctc
gaagccgccttgagtgcgggagaacgggacagattgcggggcggagtggtgcggctcagc
cgcgggcggcggttcggcggcggcatcgcgcagctggccgtcgcggtgcggaagggcgaa
ccggacgaggtcatggagattctgtcgagcggctttcctgaggtgtcgttccacggtccc
gaagatctggacgcactgcgggcggacgtggtggggacggccgccgcggtcaccgggtcc
gcggaatccggtgatgcccttgctgcgctgcggcattcggaggagcaccggctgttgtgc
gcgcaccgcgaaggtccgtacggcgtgcagtggtgggcgcggcaggcgatggagtggata
ggggaggcgaccgggcagcgactgaacccggatcgctggtatccgggccagccgctgatg
gtgactgccaatgatcacgaaacgaagatctacaacggcgacaccggggtgatcgtgcgc
cgcgacgacgacgaactcgtcgccgcattcgtgcggggcaacgaaccgttcctgttgcat
ccgacgcatctgtccgccgtgcagacggtgtacgcgatgacgattcaccgcagtcagggc
agtcagtacgacacggtgtccgtggttcttcccggcgaggcgtcgtcgatgctgactcgc
gaattgctgtacaccgcgatcacccgggcacgaaagcacgtgcggatcatcgggtccgag
gatgcagtgcgggcgggagtgcaacgtcgggtgctgagggcgagtgggcttcggagggcg
attccgtag
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