Rhodococcus sp. W8901: HUN07_05805
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Entry
HUN07_05805 CDS
T11420
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rhwq Rhodococcus sp. W8901
Pathway
rhwq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhwq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HUN07_05805
09124 Replication and repair
03420 Nucleotide excision repair
HUN07_05805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhwq03021
]
HUN07_05805
03400 DNA repair and recombination proteins [BR:
rhwq03400
]
HUN07_05805
Enzymes [BR:
rhwq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUN07_05805
Transcription machinery [BR:
rhwq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HUN07_05805
DNA repair and recombination proteins [BR:
rhwq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HUN07_05805
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
QKT10289
LinkDB
All DBs
Position
complement(1227863..1229521)
Genome browser
AA seq
552 aa
AA seq
DB search
MTDGPLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVSYSRFAVPQPLLVDIVDTMARYGRLQLVKSPVHGLTLISLDRAVLTEVM
RHKKIAPMLGAMVDDDTVIVHPSERGHLKQMLLKIGWPAEDLAGYVDGEAHPIDLAFEEG
HWHLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWK
RELIARTSLTEEEIGEYSGEKKEIRPVTIATYQVITRKSKGEYKHLELFDSRDWGLVIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWI
APADCIEVRVTLTDAERMAYATAEPEERYKLCSTARTKHAVVKSILDRHPGAPTLVIGAY
LDQLEELGEELDAPVIQGSTRNKERELLFDKFRAGEIQTLVVSKVANFSIDLPEASVAVQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVARDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPTIG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggcccgctgatcgtccagtccgacaagacactgctgctcgaggtcgatcac
gagcgcgcgaacgacgcccggcaggcgatcgccccgtttgccgaactcgagcgcgccccc
gagcacgtccacacctaccggatcactccgctcgcgctgtggaatgcccgcgccgccggg
cacgacgccgagcaggtggtggacgccctcgtcagctactcccgcttcgcggtgccgcag
ccgctgctggtcgacatcgtcgacaccatggcccggtacggccgcctgcaactggtgaag
agtcccgtgcacgggctgacgctgatcagcctggaccgggcggtgctcaccgaggtgatg
cggcacaagaagatcgccccgatgctcggcgccatggtcgacgacgacaccgtgatcgtg
catcccagcgagcgcgggcacctcaagcagatgctgctcaagatcggctggcccgccgag
gacctcgccgggtacgtcgacggcgaggcccaccccatcgacctcgcgttcgaggagggg
cactggcacctgcgcgactaccaggagatggcggccgactcgttctgggccggcggctcc
ggcgtcgtcgtgctcccctgcggcgccggcaagaccatggtgggcgcggcggcgatggcc
aaggccaaggcgacgacgctgatcctggtcaccaacaccgtcgcgggccggcagtggaag
cgcgagctgatcgcgcgcacgtcgctcaccgaggaggagatcggcgagtactcgggcgag
aagaaggagatccgcccggtcaccatcgcgacctaccaggtgatcacccgcaagtcgaag
ggcgagtacaagcacctcgagctgttcgactcccgcgactggggcctggtgatctacgac
gaggtgcacctgctgcccgccccggtgttccggatgaccgccgacctacagtcgcgtcga
cgcctcggcctcaccgcgacgctggtccgcgaggacggccgcgagggcgacgtgttctcc
ctcatcggccccaagcggtacgacgcgccgtggaaggacatcgaggcgcaggggtggatc
gcgcccgccgactgcatcgaggtgcgggtcacgctcaccgacgccgaacgcatggcgtac
gcgacggccgagccggaggagcgctacaagctgtgctcgacggcccggaccaagcacgcc
gtcgtgaagtcgatcctggaccggcaccccggtgcgccgaccctggtgatcggcgcctac
ctggaccagctcgaggagctgggcgaggaactcgacgccccggtcatccagggttccacg
cgaaacaaggaacgcgagctcctcttcgacaagttccgtgccggcgagatccagaccctc
gtggtcagcaaggtcgcgaacttctccatcgacctgccggaggcatcggtggcggtgcag
gtgtcgggcacgttcggctcccggcaggaggaggcgcagcggctgggccgactcctgcgg
ccgaagcacgacggcggtcaggcacacttctactcggtggtcgctcgggacacgctcgac
gccgagtacgccgcccaccgccaacgcttcctcgccgaacagggctacgcgtaccgcatc
acggacgccgacgacctgctcggcccgaccatcggatag
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