Rhodococcus sp. W8901: HUN07_11410
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Entry
HUN07_11410 CDS
T11420
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhwq Rhodococcus sp. W8901
Brite
KEGG Orthology (KO) [BR:
rhwq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhwq03019
]
HUN07_11410 (hrpA)
Enzymes [BR:
rhwq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HUN07_11410 (hrpA)
Messenger RNA biogenesis [BR:
rhwq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HUN07_11410 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_30
SLFN-g3_helicase
T2SSE
NACHT
nSTAND_NTPase5
PhoH
TsaE
NTPase_1
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QKT11250
LinkDB
All DBs
Position
complement(2403995..2407972)
Genome browser
AA seq
1325 aa
AA seq
DB search
MSTTPSAAETGFDRREARKRLGALTLRDEHRLRRRLDRAKSPSALAALADEISAAELRVE
GRRAQVPPITYPEALPVTQRREDIAAAIASHQVVIVAGETGSGKTTQIPKICMELGRGIR
GMIGHTQPRRLAARTVAERIAEEVGRELGDTVGYTVRFTDQVSDSTLVKLMTDGILLAEI
QRDRMLRRYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFAEHFA
VDGVPAPIVEVSGRTFPVEMRYRPLTVEVGEQTFDRDPVDAVCEAVEELAAEGDGDILVF
LSGEREIRDTADALRDRKYRNTEILPLYARLSAAEQHRVFSPHTGRRVVLSTNVAETSLT
VPGIRYVIDPGTARISRYSVRTKVQRLPIEPISQASARQRAGRCGRVADGICIRLYAEDD
FESRPAFTEPEILRTNLASVVLQMTALGLGEIEAFPFVEAPDPRAIRDGVALLEELGAIA
GPGQRRVDADTETDAETARDKPVGPQLTATGRELAQLPVDPRMARMLVEAHRNGCLREML
VIVSALSIQDVRERPAEFQQAADEKHARFAVENSDFLAYLKLWEYLREQRKELSSNQFRK
MCRNEFLHWLRIREWQDLHGQLRQITRGLGWEPGDSGGPDAATASETSIHQSLLAGLLSH
IGLREGDKRDFLGARGSRFAIFPGSGLFKKPPRWVMASELVETSRLWARMAARIEPEWAE
KLAPHLVKRTYSEPHWSTKRACAMAYERVTLYGVPLVTGRPVTYSTIDPEASRELFIRHA
LVQGEWQTQNKFFHANRALLDDVEELEHRARRRDILVDDETLFEFYDQRVGPEAVSAKHF
DTWWKQARRSDPNLLNFTTATVVNADSAAVLEGDYPDAWRQGDIQFPLTYQFEPGTEDDG
VTARIPVALLAGLRPVGFDWLVPGMRTELVTALIKTLPKQLRRQVVPAPDFAAAALAAVK
PRSESLIHAMARELSRLGSCRIDPTDFDVASLPPHLRMTFAAVDEKGKVLGKDKSLAALR
RSLAPRVEVEVAKAASTTERAPAPVWTAQTLGTLPSSVTRTLGGQKVTGYPALVPEDSGV
AVRVLTTPAAQRAAMRAGTRRLLLNAVPTQAKSVTNGMSNADRLALGQNPDGSFDALLED
CRACAVDELIAENGGPVLDPAAFETLTGKVRAQLATRVARLLHLLLPALAEAHRLSVILE
RSVGEAADDVREQRESLLFPGFVTELGSRRLKDLPRYLAAASLRLESLPGSAQRDQAGMD
VLDRVYSAYDRMLSALPEERRGDDDVNEVLWKIEELRVSLFAQSLGTAIPVSEKRVLKSI
DGIRR
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaacaccatcagcagccgagaccgggttcgatcgccgcgaggcgaggaagcgg
ctcggtgccctcaccctccgcgacgagcaccggcttcgccgacgcctcgaccgcgccaag
tccccgtccgcgctcgccgcactcgccgacgagatctccgccgccgagctgcgcgtcgag
ggccgccgggcgcaggtcccgccgatcacgtacccggaagcgctgccggtcacgcagcgc
cgcgaggacatcgccgccgcgatcgcatcgcaccaggtggtgatcgtcgccggcgagacg
ggttccggcaagaccacccagatcccgaagatctgcatggaactgggccgcggcatccgc
ggcatgatcgggcacacccagcctcgccgcctggccgcccgcacggtcgccgagcggatc
gccgaggaggtgggacgcgaactgggcgacaccgtgggctacaccgtccgcttcaccgac
caggtgtccgactcgacgctggtcaaactgatgaccgacggcatcctgctcgccgagatc
cagcgcgaccggatgctgcgccggtacgacacgctgatcatcgacgaggcccacgagcgc
agcctcaacatcgacttcatcctgggctacctcaagcagctgctcccccggcgccccgac
ctcaaggtgatcatcacctcggccactatcgacccggagcggttcgccgaacacttcgcg
gtggacggcgtgccggcacccatcgtcgaggtgtcgggccggacgttcccggtggagatg
cgctaccgcccgctcaccgtcgaggtgggcgagcagaccttcgaccgcgaccccgtcgac
gcggtgtgcgaggccgtcgaggaactcgccgccgagggtgacggcgacatcctggtcttc
ctgtcgggcgaacgcgagatccgcgacaccgcggacgccctgcgggaccgcaagtaccgc
aacaccgagatcctgccgctgtacgcccggctgtccgccgcggaacagcaccgggtgttc
tccccgcacaccgggcggcgcgtggtgctgtccaccaacgtcgccgagacgtcgctgacg
gtgcccggcatccgttacgtcatcgacccgggcacggcccgcatctcgcgctattcggtc
cgcaccaaggtgcagcgcctgccgatcgaaccgatctcgcaggcgtcggcccgccagcgc
gccggacgatgcggtcgggtcgcggacggaatctgcatccgcctctacgcggaggacgac
ttcgagtcgcggcccgcgttcaccgagccggagatcctgcgcaccaacctggcgtcggtg
gtcctgcagatgaccgccctcgggctcggcgagatcgaggcgttcccgttcgtcgaggca
ccggatccgcgggcgatccgtgacggcgtcgcgctgctcgaggaactcggcgccatcgcc
ggacccggtcagcgccgcgtcgacgccgacaccgagaccgacgccgagacagcccgggac
aagcccgtcggcccgcagctcaccgcgaccggccgcgaactggcccagttgccggtcgat
ccgcggatggcgcgcatgctggtcgaggcgcaccgcaacggctgcctgcgcgagatgctg
gtgatcgtgtccgcgctgtccatccaggacgtccgcgagcgccccgccgagttccagcag
gccgccgacgagaagcacgcccgcttcgccgtcgagaactccgacttcctcgcctacctc
aagctgtgggagtacctgcgcgaacagcggaaagagctcagctccaaccagttccggaag
atgtgccgcaacgagttcctccactggctgcggatccgcgagtggcaggacctgcacggc
cagctccgtcagatcacccgcggactcggctgggagccgggcgattccggcggcccggac
gccgcgacggcgtccgagacgtcgatccaccagtcgctgctcgcgggcctgctctcgcac
atcgggctgcgcgagggcgacaagcgcgacttcctcggcgcccgcggcagccggttcgcg
atcttccccggctccggcctgttcaagaagccgccgcgctgggtgatggcgtccgaactg
gtcgagacgtcgcgactgtgggcgcggatggccgcccgcatcgaacccgagtgggccgag
aagctggccccacacctcgtcaagcgcacgtactcggagccgcactggtccaccaaacgg
gcgtgtgcgatggcgtacgagcgggtcaccctctacggcgtcccgctcgtcaccggacga
cccgtcacctacagcacgatcgaccccgaggcatcgcgggagttgttcatccggcacgca
ctggtgcagggcgagtggcagacacagaacaagttcttccacgccaaccgcgcgctgctc
gacgacgtcgaggaactcgaacaccgggcccgacgacgcgacatcctcgtcgacgacgag
acgctgttcgagttctacgaccagcgggtcggtccggaggcggtgtccgccaagcacttc
gacacgtggtggaagcaggcgcgacgctcggatccgaatctgctgaacttcaccaccgcc
acggtggtcaacgccgactccgccgcagtactcgagggcgactaccccgacgcgtggcgt
cagggcgacatccagttccccttgacgtaccagttcgagcccggcaccgaggacgacggc
gtcaccgcgcggataccggtggcgctgctcgcgggcctgcgcccggtgggattcgactgg
ctggtgcccggcatgcgcaccgagctggtcaccgcactgatcaagacgctgccgaaacaa
ctccgccgccaggtggtgccggccccggacttcgccgcggccgcgctcgccgccgtcaaa
ccgcgatccgagtccctgatccacgcgatggcgcgcgagctgtcgcggctcggttcgtgc
cggatcgacccgacggacttcgacgtagcgtcgctgccgccgcacctgcggatgacgttc
gcggcggtggacgagaagggcaaggtcctcggcaaggacaagagcctggccgcgctgcgc
cggtccctggcaccgcgggtcgaggtggaggtcgccaaggccgcctcgaccacagaacgg
gccccggcaccggtctggaccgcgcagaccctgggcacgctgccgtcgtcggtgacccgg
accctgggcggccagaaggtgaccggctacccggcgctggtgccggaggactccggcgtc
gcggtgcgggtgctcaccacgccggccgcgcagcgcgccgccatgcgggccggcacccgc
cggctgctgttgaacgctgttccgacgcaggccaagtcggtgaccaacgggatgagcaac
gccgaccgtctcgcgctcggccagaacccggacggcagcttcgacgcgctcctcgaggac
tgtcgcgcgtgcgcggtcgacgagctgatcgccgagaacggcggccccgtgctcgatccc
gccgcgttcgagacgttgaccgggaaggtccgcgcgcagctcgccacccgtgtcgcgcgg
ctgcttcacctgctgcttcctgcgctcgcagaggcacatcgtctgtcggtgatcctcgaa
cgatccgtcggcgaggccgcggacgacgtgcgcgagcagcgagagtcgttgctgttcccc
gggttcgtgaccgaactcggctcccggcgactcaaggacctgccgcggtacctggcggcg
gcgtcgctgcggctcgagtcgctgcccggcagcgcgcaacgcgaccaggcggggatggat
gtcctcgatcgcgtgtactccgcctacgaccggatgctctcggccctgccggaggagcgc
cgaggagacgacgacgtcaacgaggtcctgtggaagatcgaggagttgcgggtgagcctg
ttcgcacagtcactgggcaccgcgattcccgtgtcggagaagcgggtactcaagtcgatc
gacgggatccggcggtag
DBGET
integrated database retrieval system
