Rhodococcus sp. W8901: HUN07_17390
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Entry
HUN07_17390 CDS
T11420
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhwq Rhodococcus sp. W8901
Pathway
rhwq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhwq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUN07_17390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhwq03019
]
HUN07_17390
03009 Ribosome biogenesis [BR:
rhwq03009
]
HUN07_17390
Enzymes [BR:
rhwq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HUN07_17390
Messenger RNA biogenesis [BR:
rhwq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUN07_17390
Ribosome biogenesis [BR:
rhwq03009
]
Prokaryotic type
rRNA processing factors
HUN07_17390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QKT12250
LinkDB
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Position
complement(3708506..3711760)
Genome browser
AA seq
1084 aa
AA seq
DB search
MADQAPPETVQEPIAEASVDPSTTPVLPEKIRVHALAKLLGVTSKQVLAEAAALGTDLRS
AQSSLQRDIAERIHATVSGAAQTAPAEPAAEPVVETASAEAAPVEPEPAAEPAPAEKPAP
RKRARKKAAPKVEVAAEPVIEAATETEAPAEATPVEPARSGDDFTGLFTNVELGTEHESA
AAPAVVQAPLFLQPEAAAAETAPRRRRSRRAAAAPEVTDESQTAADEAAPAAVAEDAEAT
SGAREDTESTEDTETAAGAESADGGESEGGEQQRRRRRGRRGRGRGRGEQQADGAESDDT
DEADNAEKAHEADKATASEDDAVEAAEAPESAEDEHAESDESGDSSRRRRRRRRRKGGSD
GEVSSEDDPPNTVVHEREPRNKARAVKDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPIL
SESEFLARREAVDRVMVVREKVGGTNPAASTQVAVLEDGVLVEHFVTGSSSSSMVGNVYL
GRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALRPGDQVLVQVSK
DPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILREIVPADAGVII
RTASEGVSEEELSRDVTRLQTQWATIEEQAAKAKEGKSGTPQALYEEPDLLVKVVRDLFN
EDFSKLVIEGEKAWSTVETYIKTVAPDLLPRVERHVVESGTPDVFETHRIDEQLAKALDR
KVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIG
GMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAF
STTCEHCHGRGIIVHSEPVEVKSTDDGGRGQSKESGGRKKRGRDRAAAAAPEPVADGQQA
HPHPSPEESAADATVKRAHPVALAMASHHGEHESHPDEHASHEAGVELEPQPQAKSEPKP
EPETKPEPETPAASDADTEKEAAPRGRRRSRRVSRAAAAPVGETSDTGTVFVIPVTEPES
APEPESVPSAAPEAPKEAAPAVAEASVEAAGPSESSDGEVPPARRPRRRRAAARPAGPPV
DAEA
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagcgccgcccgaaactgttcaggaaccgatcgcggaagcgtcggtcgac
ccgagtaccaccccggtgctccccgagaagatccgcgtgcacgcgctcgccaagctgctc
ggtgtcacgagcaagcaggtgctcgcggaggccgcagcgctgggcaccgatttgcgcagc
gcgcagtccagcctccagcgcgatatcgccgagcgcatccacgccaccgtgtccggtgcc
gcgcagaccgctccggcggagcctgccgccgagcctgtcgtggagaccgcctccgccgag
gctgccccggtcgagcccgagcccgccgcggagcccgcgcccgccgagaagcccgcgccc
cgcaagcgggcgcgcaagaaggccgccccgaaggtcgaggtcgccgcagagccggtgatc
gaggccgccaccgagaccgaagcccccgccgaggccacgcccgtcgagccggcccgctcc
ggcgacgacttcaccgggctcttcaccaacgtcgaactcggcaccgagcacgagtcggcc
gccgcacccgcggtggtgcaggccccgctgttcctccagcccgaagcggccgccgccgag
accgcaccgcgtcgtcgtcgcagccgtcgcgcggccgccgcccccgaggtgaccgacgag
tcgcagaccgcggccgacgaagccgcgccggccgccgtcgccgaggacgcggaggcgacc
tccggtgcccgggaagacacggagagcaccgaagacaccgaaaccgccgcgggcgccgag
agcgccgacggcggcgagagcgagggcggtgagcagcagcgccgccgtcgtcgtggacgc
cgtggccgcggtcgaggccgtggagagcagcaggccgacggcgccgagtcggacgacaca
gacgaggccgacaacgccgagaaggctcacgaggccgacaaggcgacggcttccgaggac
gacgccgtggaagcggccgaggctcccgagtccgccgaggacgagcacgccgagtcggac
gagtccggcgacagcagccgtcgtcgtcgccgccgccgtcggcgcaagggcggcagcgac
ggggaggtctcgtccgaggacgatccgccgaacaccgtcgtccacgagcgtgaaccgcgc
aacaaggcccgcgccgtcaaggacgaggtccagggcatcagcggctcgacgcggctcgag
gccaagcgtcagcgccgtcgtgacggccgcgacgccggccgtcgccgtcccccgatcctg
agcgagtccgagttcctggcacgccgcgaggcggtcgaccgggtcatggttgtccgcgag
aaggtcggcggcaccaacccggcggcatccacgcaggtcgcggtcctcgaggacggcgtt
ctggtggagcacttcgtcacggggtcgtcctcgtcgtcgatggtcggcaacgtctacctc
ggtcgcgtccagaacgtgctgcccagcatggaggccgcgttcatcgacatcgggcgtggc
cgcaacggcgtgctttacgccggtgaggtcaactgggaggcggccggtctcggcggcaat
tcccgcaagatcgaacaggccctgcggcccggcgaccaggtgctggtccaggtcagcaag
gatccggtcggtcacaagggcgcgcgcctgacgacgcagatcagcctggccggacgattc
ctggtgtacgtgccgggtggcacgtcgaccggtatcagccgcaagctgcccgacaccgag
cgcaagcgcctcaaggagatcctccgcgagatcgtcccggccgacgccggtgtgatcatt
cgcacggcgtccgagggcgtcagcgaggaagagctgtcgcgcgacgtcacccgactgcag
acgcagtgggcgaccatcgaggaacaggccgcgaaggcgaaggagggcaagtcgggcacg
ccgcaggcgctgtacgaggagcccgatctgctcgtgaaggtcgtccgcgacctgttcaac
gaggatttctcgaagctcgtgatcgagggcgagaaggcctggagcacggtcgagacctac
atcaagaccgtcgcaccggatctgctgccgcgggtggagcggcacgtcgtggagtccggc
accccggacgtcttcgagacgcatcgcatcgacgagcagctcgccaaggcgctcgaccgc
aaggtgtggctgccctcgggtggcacgctggtgatcgaccgcaccgaggcgatgaccgtc
gtggacgtcaacaccggcaagttcaccggtgccggcggcaatctcgaggagacggtcacc
cgtaacaacctcgaagcggccgaggagatcgtgcggcagatgcgcctgcgcgacatcggc
ggcatgatcgtcgtcgacttcatcgacatggtgctcgagtccaaccgcgatctcgtcctg
cgtcgactcaccgaggcgctcggtcgggaccgcacgcggcaccaggtatccgaggtcacg
tcgctcggcctggtccagatgacccgcaagaagctgggcaccggactggtcgaggcattc
tcgacgacgtgtgagcactgccacggtcgcgggatcatcgtgcacagcgaacccgtcgag
gtgaagtcgaccgacgacggtggccggggccagtccaaggagtcgggtggccgcaagaag
cgcggtcgtgaccgcgccgccgcggctgcgccggaacccgtggcagacgggcagcaggcg
catccgcacccgagtccggaagagtcggctgcggacgcgaccgtgaagcgggcgcatccg
gtggcgctcgcgatggcctcgcatcacggcgagcacgagtcgcatccggacgagcacgcg
tcgcacgaggccggggtcgaactcgaaccccagccccaggcgaagtccgagccgaagccc
gaacccgagacgaagcccgaacccgagacgcccgcggcgtccgacgccgacacggagaag
gaggcggccccccggggacgccgccgcagccggcgggtgtcccgtgcggcagccgccccg
gtcggtgagacctccgacacgggaacggtgttcgtgattccggtcacggagcccgagtcc
gctccggagcccgagtcggtgccgtccgctgcccccgaggcgcccaaagaggcggctcct
gcggtcgcagaggcgtcagtggaggcagcagggccctcggagtcgtcggacggtgaggtg
cccccggcacgtcgtccgcgccgccgtcgtgccgctgcacgtcccgcgggcccgccggtg
gatgccgaggcttga
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