Rhodococcus sp. WAY2: GFS60_02019
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Entry
GFS60_02019 CDS
T11412
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhwy Rhodococcus sp. WAY2
Pathway
rhwy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhwy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GFS60_02019 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhwy03400
]
GFS60_02019 (recD)
Enzymes [BR:
rhwy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GFS60_02019 (recD)
DNA repair and recombination proteins [BR:
rhwy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GFS60_02019 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
UvrD-helicase
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
AAA_22
SH3_13
TraI_hel_assoc_N
PhoH
AAA_24
T2SSE
SLFN-g3_helicase
UvrD_C
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QHE68488
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Position
2078811..2080679
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AA seq
622 aa
AA seq
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MTDVRVAQRGKGVLRIFNEAGVLAAADVHVALRLSALAGETSPDVYLATALAVRAVRAGS
VCLDLTRLREVTVDEESEVDLDDLPWPDDSTVIEALRRSPLVVGGPAGPLRPLRLVDTAE
GELLYLDRYFRQEETIRRVLDQRVSGHPVVDEASLRRGLDSLFRDQNDPAGSSAPPDRQR
IAAAVAATQWTSVIVGGPGTGKTHTVARVLALLSMQTDRPRRIALAAPTGKAAARLQESV
RDQAGELGLPPDLTAMTLHRMLGWQRGRGSRFRYNADNHVPYDVIVVDETSMVSLTMMCR
LLEALRPDTQLVLVGDPDQLTSVDAGAVLADLVARPMSGKENPLLARLVGKDLDAADDPD
EAALSAAERDRLRGGVVRLSRGRRFGGAIAQLAVAVRDADEDRVMDLLRSDAPEVSFHDV
DDLGALRKDVVDTAAGVTEAASGGDASAALQLSEAHRLLCAHREGPYGVAWWARQAMEWI
GEASGERLDPERWYPGQPLLVTANDHETRIYNGDTGVIVRTADDELVAAFARGNEPFLLH
PTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPRAESSLLTRELLYTAITRARRHVRIIGTE
EAVRAGVQRRVLRASGLRRTFR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtccgggtagcccagcgcggcaagggtgtgctgcggatcttcaacgaggca
ggagtgctcgcggctgcggatgtccatgtggcgctgcggttgtccgctctcgccggggag
acgtcgccggacgtctacctggccaccgccctcgcggtccgggcagtgcgggccggctcg
gtgtgcctagatctgactcggcttcgggaagtgacggtcgacgaggagtccgaggttgac
ctggacgatctgccgtggccggacgactccacggtcatcgaggcgctgcgccgcagcccg
ctcgtcgtcggtggaccggccggaccgctgcgaccgctgcgactggtcgacaccgctgaa
ggcgaattgctctacctcgaccggtatttccggcaggaggagacgatccgccgcgtcctc
gaccagcgcgtttccgggcaccccgtcgtcgacgaggcatcactacgccgcgggttggac
tctctgttccgggatcagaacgatccggccggctcctcggccccgccggatcggcaacgg
atcgcggccgctgtcgccgcgacccaatggacctcggtgatcgtgggaggaccgggtacc
ggaaaaacgcacaccgtggcccgcgtgctggccctgctgtcgatgcagaccgaccgacca
cgacgcatcgccctcgccgcacccacgggcaaggcggcggcgcggttgcaggaatcggtg
cgtgatcaggccggcgagctgggcttgccacccgatctgacagcgatgacgctgcaccgc
atgctgggctggcaacgcggacggggcagccgattccgctacaacgccgacaatcatgtg
ccctacgacgtgatcgtggtggacgagacctcgatggtgtcgttgaccatgatgtgccgg
ctcctcgaggcgcttcgtcccgatacacaactcgtgctcgtcggcgatcccgaccagttg
acgtccgtcgacgcgggcgcggtgctggccgacctggtggctcgacctatgtcggggaag
gagaatccgctactcgcacgtctggtcgggaaggacctggatgcggcggacgacccggac
gaggctgcgctgagtgcggcggaacgggatcggctgcgtgggggagtcgtgcggctcagc
cggggccgccgtttcggcggtgccatcgcccaactcgctgtcgcggtgcgagacgcggac
gaggaccgcgtgatggatctgctgcgcagtgatgcccccgaggtgtcgttccacgacgtc
gacgatctcggggcgctgcggaaggacgtggtcgacactgcagcgggtgtcaccgaggcc
gcgtcgggcggcgacgcctcggcggcactgcagctttcggaggcgcatcgcctgctctgt
gcgcaccgggagggtccgtacggtgtcgcgtggtgggcgcggcaggccatggagtggatc
ggtgaggcttcaggggagcggctggaccccgagcgttggtatcccggtcagccgcttctg
gtcacggccaacgatcacgagacgcgcatctacaacggtgacaccggggtgatcgtgcga
accgccgacgacgaactcgttgccgccttcgcgcgcggtaacgaaccgtttcttctgcat
cccacgcacctgtcggcggtgcagaccgtctacgccatgacgattcaccgcagtcagggc
agtcagtacgacacagtgtccgtggtgctaccgagagcggagtcgtcgctgctgacccgg
gaactgctgtacacggcaatcacgcgggcccgtcggcacgtgcggatcatcgggacggag
gaggcggtgcgggcgggagtgcaacgccgggtgctgcgggcgagcgggctgcggcgaacc
ttccggtag
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