Rhodococcus sp. WAY2: GFS60_07053
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Entry
GFS60_07053 CDS
T11412
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rhwy Rhodococcus sp. WAY2
Pathway
rhwy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhwy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFS60_07053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhwy03019
]
GFS60_07053
03016 Transfer RNA biogenesis [BR:
rhwy03016
]
GFS60_07053
Enzymes [BR:
rhwy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GFS60_07053
Messenger RNA biogenesis [BR:
rhwy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GFS60_07053
Transfer RNA biogenesis [BR:
rhwy03016
]
Prokaryotic type
tRNA degradation factors
GFS60_07053
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QHE73394
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Position
pRWAY01:760707..762581
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AA seq
624 aa
AA seq
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MSDSGVPLLMVDRSEALDRDDAFAVAELADGSGWKLEVHIAGVADVVPLGSAADATAFLR
RESKYLSRRTVPMLGRDTEQAATLTEIAERSTLRVQAALSADGIVSGVSVDRGRVPAGRC
VAVDHAQITEILGSVDDPLHKCVKAANDAAQVLLQGRRRSGAFALYDLTHGWRSTEEGGI
APIPSDVRTVGYVIVQEMMIAANEAIAMWCVREDLPVLFRNHRSAVTAGSTEDLAAEVAV
AMTDPVLFEKLRSRLQSSFRAATYAPTVHGHHGLRLAAYTHATSPLRRVSDLITQRVIFA
HLDSAPAPYTTEQLGNLAVDINRRIAADREEKAAHFKALDRKVTAQVVAAGELEGLDSKR
WAKVLAAATARDPIGEVVTELRRRIKADEVTVTTIVTLLDASEGWTPIRSEVFDWASQSH
PEFGPSVVSMWLQAHPDLPRPEIDSDHRGPSHTPVFAARLRVGDVCGPWATAGSKKRAEQ
DAAWGLTQAVAAGKSHPETDSPLRDEPHAVPPSATHAGIRARPAPASNGNPTSDCGQASK
RRERAHKNPIAWVLSHAQHHGHPSPQWSVKMEGSAHAPVFTCEVQYRDHAAIGRGTTKTH
AKTAAAEYLIDSLLDEASPAQSHP
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgatagcggtgtgccgttgttgatggtggatcggtccgaggcactcgaccgcgat
gatgcgttcgcggtagccgaactcgccgacggttcggggtggaagctggaggtgcacatc
gccggcgtcgcggacgtcgtgcccctaggctccgcggctgatgcgacggctttcctgcgc
cgtgaatcgaagtacctttcccgccggacggtaccgatgcttggccgcgacaccgagcaa
gcggcaacgttgaccgagattgcggagagatccacactgcgcgtccaggctgctctgtcc
gcggacgggattgtgtccggggtgagtgtcgatcgcgggcgggtgccggccggccggtgc
gtcgcggtcgatcacgcgcagatcaccgaaatactgggttcagtcgacgacccgctacac
aagtgcgtgaaagctgcgaatgacgccgcgcaggtgctgcttcaggggcgtcgccggtcc
ggtgccttcgcgctctacgacctcacgcatggctggcgttccaccgaggaagggggaatc
gcaccgattccatccgacgtgcgcacggtcgggtatgtgatcgtgcaggagatgatgatc
gcagccaacgaggcgatcgccatgtggtgtgtgcgggaggatctcccggtcctgtttcgc
aatcaccgcagcgcggtgaccgcgggcagcaccgaggaccttgcagcggaggtggcggtg
gcgatgactgatccggtgctgttcgagaagctgcgttcgcgtctgcagtcgtcgtttcgt
gctgccacgtatgccccgacggtgcacggccatcacgggcttcggttggcggcctacacg
cacgcgacgtcgccgctgcgcagagtgtcggacctgatcactcagcgggtaattttcgcc
cacctcgattccgcgcctgccccgtacacaaccgaacaactcggcaacctcgccgtcgac
atcaaccggcgcatcgccgcggaccgggaagaaaaggcagcacacttcaaggcactcgat
cggaaggtgaccgcgcaggtcgtcgccgccggtgaactcgagggtctcgattcgaagcgg
tgggcgaaggtgctggcggccgcgaccgcacgcgacccgatcggtgaagtggtcaccgag
ctccgccgccgaatcaaggccgacgaggtaactgtcaccaccatcgtgacgttgctcgac
gcctcggagggttggacaccgatccgatccgaggtcttcgactgggcatcgcagtcgcat
ccggaatttgggccgagtgtggtgtcgatgtggctacaagcccatcccgatctgcctaga
cccgaaatcgatagcgatcaccgtgggccctcccacaccccggtattcgctgcccgcctc
cgtgtaggtgacgtctgcggaccgtgggcaacggcgggaagtaagaagcgagccgagcag
gacgcggcatggggcctcacccaggcggtcgcagccgggaagagccacccggagacggac
tccccgctgcgggatgagccgcacgcagtgcccccgagcgccacgcacgcagggatacgg
gcgcggccagcaccagcgagcaacggaaacccgacttcggattgtgggcaggcgtcgaaa
cggcgggaacgagcgcacaagaacccgatcgcgtgggtactcagccatgcccaacaccac
gggcatccctccccacagtggtcagtaaagatggagggctctgcccacgccccggtgttc
acatgcgaagtccaataccgggaccacgcggcgattggccgcggaacaacaaaaacacac
gcgaaaaccgctgcggcagagtatcttatcgattcgcttctcgacgaggcgtcgcctgct
caatcacacccgtag
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