Rhizobium sp. N731: AMK02_CH02157
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Entry
AMK02_CH02157 CDS
T04809
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhx
Rhizobium sp. N731
Pathway
rhx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMK02_CH02157 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhx03400
]
AMK02_CH02157 (mfd)
Enzymes [BR:
rhx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMK02_CH02157 (mfd)
DNA repair and recombination proteins [BR:
rhx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMK02_CH02157 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANK85741
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All DBs
Position
2148850..2152353
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AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLEPLLLAELARTGEPVAYVISDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAVVLVTANAMLQK
VAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTQDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRVVTDHTVREAAEERSKL
VLDYFDARLNSGQPAKGHMAQGTPYKPVTPGQLYLDSKLFAKTLDALRAIRVSPFNEIEG
EARRVVNIEARQGQRWARSNAEGGGDAERVNIFDVVVKHIADRRAGGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPVEALKDLATLGKGEAAAAVLNLESGFEAGDLVVIGEQDILGDR
MVRRSKRRKRAADFIAEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPVLTTPDGLYDEFAARFPYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKK
EVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATADRRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPEDYVPDLHLRMALYRRLGELTELKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLF
LTRDLPTPEKRLQGAAVIMTQLAEMAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccattgccgagccgctgacgatcggc
aatgtgcctgccggcctcgaaccgctgctgctcgccgaactcgcccgcacgggagagccg
gtcgcctacgtcatctccgacggccaccgcatggccgatctcgagcagatgctgggtttt
gtcgcccccgacattccggttctcaccctaccggcctgggactgcctgccctatgaccgc
gtctcgccgagcgccgatacctcggcccgccggcttgccgcactcggcggcctcatcgcc
caccgcaaaaagccgcatgcggccgtcgtgcttgtcaccgccaatgccatgctgcagaag
gtggcgccgcaggatgtcattgaaagcctgagcttttcggcccgtcctggcaaccagctg
cgcatggacgatttggccgggcgcctggagcgcaacggcttcgaccgcgttgcgaccgtt
cgcgaggtcggcgaatatgccgtgcgcggcggcatcctggacgtcttcgtgccagggtcg
gaagagccggtccgcctcgatttcttcggcgacacgctggaatcgatccgcagcttcgat
ccggcgagccagcgcaccaccggccaggtgcgctcgctcgatctcaatccgatgagcgag
gtgacgctgacccaggatacgatcagccgcttccgcaagaactacctctcggctttcggc
gcgacgacgcgcgatgatgcgctttatctcgccgtctccgaaggtcgccgttatcccggc
atggagcattggctgccgctcttctacgagaagctcgataccgtcttcgattatctcagc
ggtttccgtgtcgtcaccgaccacacggtgcgtgaggcggcggaggagcgctccaagctc
gtcctcgattatttcgacgcccgcctgaattccggtcagccggccaagggccacatggcg
caggggacgccctacaagccggtaacgccgggccagctctatctcgacagcaagcttttc
gccaaaaccctcgacgcgctacgcgcgatccgcgtcagccccttcaacgagatcgagggc
gaggcgaggcgggtcgtcaatatcgaggcccgccagggccagcgctgggcccgctcgaat
gccgaaggcggcggtgacgccgaacgcgtcaatattttcgacgtcgtcgtcaagcacatc
gccgaccggcgcgccggcggggcgaaggtgctggtcaccgcctggaccgaaggttcgctg
gagcggctgctgcaggtgctgaacgagcatggcctcgaaaaggtcaagccggtcgaggcg
ctgaaagatctcgccacgctgggcaaaggcgaggcggccgcggccgtgctcaatctcgaa
tccggcttcgaggccggcgatctcgtcgtcatcggcgagcaggatattctcggcgaccgc
atggtgcgccgctccaaacgccgcaagcgcgccgccgatttcattgccgaggtcgcaggc
ctcgatgaaggctcgatcgtcgtccatgccgaacatggcattggccgcttcatcgggctg
aagaccatagaggcggcaggcgccccgcatgcctgcctcgaactgcaatatgccgacgag
gccaaactcttcctgccggtcgaaaacatcgatctgctctcgcgctacggcggcgagggc
accgacgcccagctcgacaagctcggcggcggcgcctggcagatgcgcaaggccaagctc
aagaagcggctgctcgatatggcggacgcactgatccgcatcgccgccgagcgcctgact
cgccatgcgccggttctgacgaccccggatgggctttacgacgagtttgctgcccgcttc
ccctatgacgaaaccgaagaccaggacaatgccatcgacgcggtgcgttccgatctcggc
gctggccggccgatggatcgcctggtctgcggtgacgtcggcttcggcaagacggaggtg
gcgctgcgcgccgccttcgtcgccgcgatgaacggcgtccaggttgccgtcgtcgtgccg
acgaccttgcttgcccgccagcatttcaagactttttccgagcggttccgtggcctgccg
gtgcgtgtccagcaggcctcccgccttgtcggcgccaaggatctggcgctgaccaagaag
gaagtggccgaaggcaagaccgatatcgtcgtcggcacccatgcgctgctcggcgccggc
atcaaattcgccaatctcggcctgctggtcatcgacgaggagcagcatttcggcgtcaag
cacaaggagcggctgaaggagctgaagagcgacgtgcacgtgctgacgctgtcggcgaca
cccatcccgcgcacgctgcagcttgccatgaccggggtgcgcgaactgtcgctgatcacc
acgccgccggttgaccgcatggcggtgcgcaccttcatctcgccgttcgacagccttgtc
atccgcgagacgctgatgcgcgagcactatcgcggcggccagagcttctatgtctgcccg
aggcttgccgacctcgccgatgtgcatgccttcctgcaatccgacgtgccggagctgaag
gttgccgtcgcccatggccagatgccggccggcgaactggaagacatcatgaacgccttc
tatgaaggccgctacgatgtgctgctgtcgacaaccatcgtcgaatccggcctcgatgtg
ccgacagccaacacgctgatcgtccaccgcgccgatatgttcggccttgcccagctgtat
cagctgcgcggccgcgtcggccgctcgaaggtgcgcgctttcgcgctcttcaccctgcct
gtgaacaaggtactgacggcgacggccgaccgccggctgaaggtgctgcagtcgctcgat
acgcttggcgccggcttccagctggcgagccacgacctcgatatccgcggcgccggcaac
ttgctcggcgaggagcagtcgggtcacatcaaggaagtcggcttcgaactctatcagcag
atgctggaagaggcagtcgccgaggtcaagggtgtcgacgagatccacgacaccggctgg
tcgccgcagatctcggtcggaacgacggtgatgatcccggaagactacgtgcccgacctg
catctgcgcatggcactttaccgccgtctcggcgaactgaccgaactcaaggagatcgac
ggcttcggcgccgagatgatcgaccgcttcgggccgatgccgatcgaagtgcagcatctc
ctgaagatcgtctacatcaagtcgctctgccgtaccgccaatgtcgaaaagctcgatgcc
ggcccgaagggcgtggtcgtgcagttccgcaacaaggaattccccaacccggcaaacctc
gtcggctacatcggcaagcagggtacgatggcgaagatccgccccgatcacagcctgttc
ctgactcgcgacctgccgacaccggaaaaacgcctgcagggtgctgccgtgatcatgacg
caactggccgagatggcgaaataa
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