Rhodoferax koreensis: RD110_00765
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Entry
RD110_00765 CDS
T04721
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RD110_00765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhy03019
]
RD110_00765
03400 DNA repair and recombination proteins [BR:
rhy03400
]
RD110_00765
Enzymes [BR:
rhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RD110_00765
Messenger RNA biogenesis [BR:
rhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RD110_00765
DNA repair and recombination proteins [BR:
rhy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RD110_00765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
APW35923
UniProt:
A0A1P8JQ89
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All DBs
Position
complement(167388..169256)
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AA seq
622 aa
AA seq
DB search
MNSNLTAILRETFGYEQFRGPQQAIVEHVVGGGDALVLMPTGGGKSLCYQIPAIARQQAG
QGVAIVVSPLIALMHDQVGALHEAGVSAAFLNSTLSFDEANDVERRLQRGEITLLYAAPE
RLTTPRFLQQLDALHARGQLSMFAIDEAHCVSQWGHDFRPEYRALTVLHERFAGVPRIAL
TATADALTRADIVERLQLEEARHFVSSFDRPNIRYTIVEKKDATSQLLRFIQREHAGADF
QDAGVVYCQSRKRVEEIATILSDNGIKALPYHAGLDAKVRQDHQDRFLRQEGIVMVATIA
FGMGIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLPAAAWMTYGLQDVVNQRRMIDES
PAGEEFKQVMRGKLDALLTLAEATDCRRVRLLRYFGEQSVPCGNCDNCLTPPQVWDGTDA
ARKLLSTIYRVQQASGISFGTGHIMDILRGKATDKVKQFGHERVSTFGIGAEFSETQLRG
VLRQLIAIGAVAVDSQAFNTLQLTDASRAVLKGETKVQLRETLSSPTDRKSRRSNGEKTA
APPAALGLDDAAQVRFANLKAWRAEVAKEHNLPAYVIFHDATLAAIAGRSPHSLEDLQGI
SGIGTKKLEAYGAEVLRVCTAG
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaattccaacctgaccgccatcctgcgcgagactttcggctacgagcagttccgtggc
ccccagcaggccatcgtggagcacgtggtgggcggcggcgatgcgctggtgttgatgccc
accggcggcggcaagtcgctgtgttaccagatcccggcgatcgcgcggcagcaggccggc
cagggcgtggccattgtggtgtcgccgctgatcgcgctgatgcacgaccaggtgggtgcc
ctgcacgaagccggcgtgtcggcggcgttcctgaattcgaccctgagcttcgacgaggcg
aacgacgtcgagcgccggctccagcgcggcgagatcacgctgctgtatgccgcacccgag
cggctgacgacgccgcgttttttgcagcagctcgacgcgttgcatgcgcgcggccagctc
agcatgttcgccatcgacgaggcgcattgcgtgagccagtggggccacgacttccgccct
gaataccgcgcgctgacggtgctgcacgaacgttttgccggcgtgccgcgcatcgcgctc
acggccacggcggatgcgctcacgcgcgccgacatcgtggagcggctgcaactggaggaa
gcgcgccatttcgtcagcagcttcgaccggccgaacatccgctacaccatcgtcgagaag
aaggacgcgacttcgcagttgctgcgcttcatccagcgcgaacacgcgggcgccgacttc
caggacgcgggcgtggtgtattgccagtcgcgcaaacgcgtggaagagatcgccaccatc
ctcagcgacaacggcatcaaggccctgccctaccacgccgggctggacgccaaggtgcgg
caggaccaccaggaccgcttcctgcgccaggaaggcatcgtgatggtggccaccatcgcc
ttcggcatgggcatcgacaagcccgacgtgcgtttcgtggcgcatgtggacatgccgaag
aacatcgaaggctactaccaggagacgggtagagcaggccgcgacggcctgccagcggcc
gcgtggatgacgtacggcctgcaggacgtggtgaaccagcgccgcatgatcgacgaaagc
ccggccggcgaggaattcaagcaggtgatgcgcggcaagctcgatgcgctgctgacgctg
gccgaagccacggattgccggcgcgtgcggctgttgcgctacttcggggaacagtcggtg
ccttgcgggaactgcgacaactgcctgacgcctccgcaggtctgggacggcacggacgcc
gcgcgcaagctgctcagcaccatctaccgcgtacagcaggccagcggcatcagcttcggc
accggccacatcatggacatcctgcgcggcaaggcaacggacaaggtcaagcagttcggc
catgaacgcgtgagcaccttcggcatcggcgcggagttcagcgagacacagctgcgcggc
gtgttgcgccagctcatcgccattggcgcggtggcggtggactcccaggccttcaacacc
ttgcagctcaccgacgcctcacgcgccgtgctcaagggcgaaaccaaggtgcagctgcgc
gagacgttgtccagccccaccgaccgcaaatcgcgccgcagcaacggtgaaaagaccgcc
gccccgcccgccgcgctcggcctggacgacgcggcgcaggtgcgcttcgccaacctcaag
gcctggcgcgccgaggtggccaaggaacacaatctgccggcctatgtgatcttccacgac
gcgacgctggccgccatcgccggccgctcgccgcattcgctggaagatctgcagggcatc
agcggcatcggcaccaagaaactcgaggcctacggcgcggaagtgctgcgggtgtgcacg
gcgggctga
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