Rhodoferax koreensis: RD110_06870
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Entry
RD110_06870 CDS
T04721
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RD110_06870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhy03019
]
RD110_06870
03009 Ribosome biogenesis [BR:
rhy03009
]
RD110_06870
Enzymes [BR:
rhy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RD110_06870
Messenger RNA biogenesis [BR:
rhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RD110_06870
Ribosome biogenesis [BR:
rhy03009
]
Prokaryotic type
rRNA processing factors
RD110_06870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
APW36951
UniProt:
A0A1P8JTB1
LinkDB
All DBs
Position
1461921..1465040
Genome browser
AA seq
1039 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFTQGVPVNQARISDVIREGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWSAIDGAGKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDVYEQAQ
QFMAHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARSIRGGDIEETATRTNLEAAEEVARQMRLRDLGGLIVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEESLKDNTASVLCQVPVDVASFLLNEKRTEIAKIELKQRINVLMVPNKTLETPN
YKLERLKHDDPRLDHIEASYKMADEIDDATSVTRRSQEPTNKQTPVIKGVLPDAPAPVAV
PKPVAEVAAPAPAPVVAPPAPAPAETGFFGWIKGLFGVKPAPAPAPVVAAPPAPAAKTEE
KREGRDGRGNREGGREGGAGRSRGGRGGREEVEGRGGRGGRGGAPRDGESRELREPREPR
EPREGQERGAARNGAERPPRGDRPERGERGERNERPAPVAGEEGQTGRGGRGRGERRPRQ
DAETANLAPEALAQGQAGQDAAAASVEGASQEARPERAPRQPGERGERPEGRERGERGGR
GGRGSRGERGPREEGQPGRERNEARTDGGQELSAEAPAAAERVDAEPAARPERPSYFAVA
AASTAAAPSAQPEAAVNAADGGERVETAEGAEPQRREKRSRDRYGRDRKDRAPREGADAE
GASAPAAFVPNEVALAAEPAAPVAAPAPVQAAPVAASAPAPAPVAAPVATPAPAVAASSL
PKAQAFVLPLVELAEVAQSSGLQWVGTDAERAAAVQAAIAAEPKPVHVPRERPPAIVVQN
EPLVMVETKRNLSDMQLPF
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaatgccacgcaggccgaagaacgccggctggccatcgtcgac
gggcagaaactgctcgactacgagatcgagatcgaagggcgcgaacagcgcaagggcaac
atctacaaggcggtcgtgacccgcgtcgagccatcgctcgaagcctgtttcgtcgactac
ggcgaagaccgccacggcttcctgccgttcaaggaaatctccaagcaatacttcacgcag
ggcgtgccggtcaaccaggcccgcatcagcgacgtgatccgcgaaggccaggagctgctg
gtccaggtcgagaaggaagaacgcggcaacaagggcgcggccctcaccaccttcgtgtcg
ctcgccggccgctacgtggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgaaggcgacgaccgggccgagctcaaggaagcgatggaccagctcgaatacccg
aacgggatgagcatcatcgcgcgcaccgccggcatcggccgcagcgcgcccgaactccag
tgggacctgaactacctgctcaagctgtggagcgccatcgacggtgccggcaagggcggc
aagggcgctttcctgatctaccaggaatcgagcctggtgatccgcgccatccgcgactac
ttcaaccacgacatcggcgacatcctgatcgacaccgacgacgtgtacgagcaggcccag
cagttcatggcccacgtcatgcccgagcacgccgcccgtgtgaagcgctaccgcgacgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgagtcggcctacgcgcgcacc
gtgcagctgccttcgggtggcgccatcgtgatcgaccacaccgaagccctggtgtcggtg
gacgtgaactccgcccggtccatccgcggcggcgacatcgaggaaaccgccacccgcacc
aacctggaggccgccgaggaagtggcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagagtcgcgcaaccgccgcgacgtggaaaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggcaccatcagcaagttc
ggcctcatggaaatgagccggcaacggcttcggcctgcgttgtcggaaggcgcctcgatc
ccttgcccgcgttgcggcggctccggccacatccgcgacacggaaagctccgcgctgcag
atcctgcgcatcatccaggaggaatcgctgaaggacaacacggcctccgtgctgtgccag
gtgccggtcgacgtggcctcgttcctgctcaacgagaagcgcaccgagatcgccaagatc
gagctcaagcagcgcatcaatgtgctgatggtgcccaacaagacgctggagacgccgaac
tacaagctcgaacgcctgaagcacgacgatccacgcctggaccacatcgaggccagctac
aagatggccgacgagatcgacgacgccacctcggtgacgcgccgctcgcaggagccgacc
aacaagcagacgccggtgatcaagggcgtgttgcccgacgcacccgcgccggtggccgtg
cccaagcccgtggcggaagtggccgcgccggcacctgcgccggtggtcgccccacccgcg
ccagcgcctgcggaaaccggcttcttcggctggatcaagggtctgttcggcgtgaagccg
gcaccggcgccggcccctgtggtcgcggcaccgcccgcaccggcggcgaagaccgaagaa
aaacgcgaaggccgtgatggccgcggcaaccgcgaaggcggccgtgaagggggcgctggc
cgtagccgtggtggccgaggtggccgcgaggaagtcgaaggccgcggcggtcgcggtgga
cgcggtggcgcgccgcgcgacggcgaaagccgtgaactgcgcgaaccgcgtgaaccacgc
gagccccgtgaaggccaggaacgcggcgccgcacgcaacggcgccgagcgcccgccgcgc
ggcgatcgtccggaacgcggcgaacgtggtgaacgcaacgaacgccccgcaccagtcgcc
ggtgaagaaggccagaccggccgcggtggccgcggacgcggtgaacgccgcccacgccag
gacgcggaaaccgcgaacctcgcacccgaagcgctggcccaggggcaggcaggccaggat
gcggcggccgcatcggtcgaaggcgccagccaggaagcacgtcctgaacgcgcgccacgc
cagcctggcgaacgtggtgaacgtcccgaaggccgtgaacgcggcgagcgtggcggaaga
ggcggtcgcggcagccgtggcgaacgtggtccgcgcgaagaggggcagcccggccgcgag
cgcaacgaagcccgcaccgacggtggccaggaactgtcggccgaggcaccagccgccgcc
gaacgcgtggacgccgaaccggccgcacgtccggagcgtccgtcctacttcgcggtggcc
gcggcatcgaccgcagcagccccctcggcccagcccgaggcggccgtgaatgccgccgac
ggcggtgagcgcgtcgaaacggcggaaggcgccgagccgcaacgccgcgagaaacgctcg
cgtgaccgttacggccgcgaccgcaaggaccgcgcaccgcgtgaaggcgccgatgccgag
ggcgccagtgcgcctgcggccttcgtgccgaacgaggtggcgctggcggccgaaccggct
gcgcccgtcgctgcgccggcaccggtccaggccgcacccgtggccgcttccgcacctgca
cccgcacccgttgcggcaccggtggcgacgccggcgccggctgttgccgcgtcgtcgctg
cccaaggcccaggccttcgtgctgccgctggtcgaactcgccgaagtggcgcaaagctcc
ggcctgcaatgggttggcaccgatgccgaacgcgccgccgccgtccaggccgcgattgct
gccgagcccaagccggtccacgtcccgcgcgaacgcccaccggcgatcgtggtgcagaac
gagccgctggtgatggtcgagaccaagcgcaacctgagcgacatgcaactgccgttctga
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