Rhodoferax koreensis: RD110_09445
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Entry
RD110_09445 CDS
T04721
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RD110_09445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhy03019
]
RD110_09445
03400 DNA repair and recombination proteins [BR:
rhy03400
]
RD110_09445
Enzymes [BR:
rhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RD110_09445
Messenger RNA biogenesis [BR:
rhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RD110_09445
DNA repair and recombination proteins [BR:
rhy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RD110_09445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
AAA_22
HisKA
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
APW40590
UniProt:
A0A1P8K3K8
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All DBs
Position
2026767..2028521
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AA seq
584 aa
AA seq
DB search
MGGKPSTLERKASATPAQRDRRIRDALRRGFGLQRMRTGQREVIERVLDGRHTLAVMPTG
AGKSLCYQLPALLLPGKTVVVSPLIALMKDQCETLCERGIQAVQVNSAIDAETLHAAERA
IADGTARIVLTTPERLADAAFMALLQRQPTSLLAVDEAHCISQWGHDFRPAFLDIAPAFR
KLGKPTVLALTATATDAVTADIRTQLGIAASGVINTGAYRANLHYRVEQVAREEDKLARV
LALVAGAEGSGLVYTATVKAAEAVHAALVAAGASALIYHGKLPAADRHAAQEAFMDGRVR
VMVATNAFGLGIDKPDIRFVLHYQMPAGLDAYYQESGRAGRDGLDADCTLLFLRSDKAVQ
QFFMGGRYPGEDDVRALYGALQGTPPDAQDGWSLAQLQHKLRRPLNKLRVATSLLRRQRI
AAVDTGGHVYLLKKHLDDAGLLALMTAYRGKRELDQDALEGMVFYAQTGQCRWRVLLAHL
QGREDAEDCGGCDNCRRIAEARAGLQAQLAERAVETVQTLATGPVFKPDDAVKVKRYGRG
RVVAADASTVTVAFEEGPQRAFHPDYVSPVRPASARSRRNTTKL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atcggcggcaagccatccactcttgaacgcaaggcctctgcgacgcctgctcagcgagac
aggcgcatccgcgatgccctgcggcggggcttcggcctgcagcggatgcgcactggccaa
cgcgaggtgatcgagcgcgtactcgatggccgccacacgctggcggtgatgccgaccggt
gcgggcaaatcgctgtgttaccagttgcccgcgctgctgttgcccggcaagaccgtcgtg
gtctcgccgctgatcgcgctgatgaaggaccaatgcgaaacgctgtgcgagcgcggcatc
caggccgtgcaggtcaacagcgccatcgatgccgaaaccctgcacgcggctgaacgggcc
attgccgacggtaccgcgcgcattgtgctgaccacccccgagcggctcgccgatgcggcg
ttcatggccttgctgcagcgccagcccacgagcctgctggccgtggacgaggcccattgc
atctcgcagtggggccatgacttccgtcccgcgttccttgacattgcgcccgccttccga
aagctcggcaaacccacagtgctggcgctcaccgccaccgcgaccgacgccgtcaccgca
gacatccgcacgcaactcggcattgcagcgagcggcgtgatcaacactggcgcctaccgc
gcgaacctgcactatcgcgtcgaacaggtcgcgcgcgaggaagacaagctcgcgcgggtg
ctggccctggtggcaggcgccgaaggcagcgggctggtctacacggccacggtgaaggcc
gccgaggccgtgcacgccgcgctggtggccgccggtgcctcggcgctgatctaccacggc
aagttgcccgcggccgaccgccacgcggcgcaggaagcgttcatggacgggcgcgtgcgc
gtgatggtggcgacgaacgctttcggcttgggcatcgacaagcccgacatccggttcgtg
ctgcactaccagatgccggccgggctcgacgcgtattaccaggaatcgggccgtgcgggc
cgcgacgggctggacgcggactgcacgctgctgttcctgcgcagcgacaaggccgtacag
caatttttcatgggtggacgttatcccggcgaagacgacgttcgggctctctatggcgcg
ctgcagggcacgccgccggatgcgcaggacggctggtctctggcccaactgcagcacaag
ctgcgccggccgctgaacaagctgcgggtggccacaagcctgctgcgccgccagcgcatc
gctgccgtcgacacgggtggccacgtctatctgttgaagaaacacctggacgacgctggc
ctgctggccttgatgacggcctaccggggcaagcgcgagctcgaccaggacgcgctcgaa
ggcatggtcttctatgcccagaccggccagtgccgctggcgggtgctgctggcgcacctg
cagggccgggaagacgcggaggattgcggaggctgcgacaactgccgccgcatcgccgag
gcccgggccggcctgcaggcccaactcgccgagcgtgcggtcgagacggtgcagacgctg
gcgaccgggccggtgttcaagccggatgacgcggtgaaggtgaagcgctatggccggggc
cgcgtggtggcagccgatgcgtcaaccgtgactgtggccttcgaggaggggccgcagagg
gcgttccaccccgactacgtgtcgccggtgcggccggcgtcggcccgctcgcgccggaac
accacgaagctgtag
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