Rhodoferax koreensis: RD110_12715
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Entry
RD110_12715 CDS
T04721
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy03030
DNA replication
rhy03430
Mismatch repair
rhy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RD110_12715
03430 Mismatch repair
RD110_12715
03440 Homologous recombination
RD110_12715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhy03032
]
RD110_12715
03400 DNA repair and recombination proteins [BR:
rhy03400
]
RD110_12715
Enzymes [BR:
rhy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RD110_12715
DNA replication proteins [BR:
rhy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RD110_12715
DNA repair and recombination proteins [BR:
rhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RD110_12715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
APW37945
UniProt:
A0A1P8JW25
LinkDB
All DBs
Position
2706194..2709730
Genome browser
AA seq
1178 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDDVIQAAKRDQQPALAITDLSNLFGAIKFYKEARGKGIKP
VIGAEIFLEGLGKEAGALSRVVVLVQNKQGYLNLSELLARGFTQNVVKAQAVIKLVWLQE
LGDGLICLSGAQAGPVGQALVQGDEARAADVALQLASVFPHRFYLELQRAGRPDDETQVA
GAVQLAARLKLPVVATHPVQFTEEADYEAHEARVCISEGEILGNPRRVRRFTREQYFKSA
AQMEALFADVPSAIANTAEIAKRCSLTLVLGKPQLPDFPTPEVNGERMTPENYFRYASHE
GLKERLLHLYPDEAEREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFINWAKNNGCPV
GPGRGSGAGSLVAYALKITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQGNRDRVIDYV
KDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLAYPPE
VKKDGDKNNYALELEPLLYERVRAEEDVRTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLT
DFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEFIVKRHKGQENFA
FENIPLDDKPTYRLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIALNALYRPGPMDL
IPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAM
GKKKAEEMAEHREKFRAGALATHGIEQAKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHT
GWLKVHYAAEFYCANMTVEMDNTDKLKLLYEDAVKMGLTFEPPDVNRGRYRFEPVTDKVI
RYGLGAVKGTGQQAIDAIVAAREEGGPFKSLFDFCLRVDRARLNKRTVEALIKAGAFDAL
HLNRAELVASIDRAFAFAAAAAANAGQGGLFDMMDDGHGSSTEEPGLVETTPWGVKEQLT
LEKTAVGFYLSGHLFDEVKAEVRQFAKRQVADVVDGRDPVLLAGIVSELRVINGQRGKLG
LFRFDDGTGMLDARVSEAVMNANKNLFREDELIIVMGKVQVDRFGGGGLQLTVVEAWDLA
TARCRFGKFLRVTVAPGEKAAAPDIARVVKEFPPKREMSDHGDILRGLMVRLQVQRRTDR
GAAGAELQLGEEARFFPTDEALASWQIGTGRAEIVYEA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgttcgttcaccttcgcctccacaccgagttttccgtcgtcgacggcaccaaccgcatc
gacgacgtcattcaagccgccaagcgggaccagcagcccgcgctggccatcaccgacctc
agcaacctgttcggcgccatcaagttctacaaggaagcgcgcggcaagggcatcaagccg
gtcatcggcgcggaaatctttctcgagggcctgggcaaggaggccggcgccctgtcgcgg
gtggtggtgctggtgcagaacaagcagggctacctgaacctgtccgagttgctggcgcgc
ggcttcacgcagaacgtggtcaaggcgcaggcggtcatcaagctggtgtggctgcaagaa
ctcggcgacgggctgatctgcctgtccggcgcacaggccgggccggtgggccaggcgctg
gtgcagggcgacgaggcgcgggccgccgacgtggcgctgcagctggcctcggtgtttccg
caccgcttctacctggagctgcagcgcgcgggccggcccgacgacgagacccaggtggcc
ggcgccgtgcagctcgcggcccggctcaagctgcctgtggtcgccacgcaccccgtgcag
ttcacggaggaggcggactacgaggcccacgaggcgcgcgtgtgcatctccgaaggcgag
atcctcggcaatccgcggcgcgtgcgtcgcttcacgcgcgagcagtacttcaagtcggcc
gcgcagatggaggccttgttcgccgacgtgccctcggccatcgccaacaccgccgagatc
gccaagcgctgcagcctgacgctggtgctgggcaagccgcagctgcccgacttcccgacg
cccgaggtcaacggcgagcgcatgacgccggagaactacttccgctacgcctcgcacgag
gggctgaaggagcggctgctccacctctatcccgatgaggccgaacgcgaggcacagcgc
ccgcgctacgtggagcggctggagttcgagatcggcaccatcctgaagatgggtttcccc
ggctacttcctgatcgtgggcgacttcatcaactgggccaagaacaacggttgcccggta
ggcccgggccgcggctcgggcgccggctcgctggtggcctatgcgctgaagatcaccgac
ctcgacccgctgcagtacaagctgctgttcgaacgtttcctaaatccggagcgtgtgtcg
atgcccgacttcgacatcgacttctgccagggcaaccgcgaccgcgtgatcgactacgtg
aaggacaaatacggcaagaacgccgtgagccagatcgccaccttcggcaccatggccgcc
aaggccgcgatccgcgacgtgggccgcgtgatggacatgagctacaccttctgcgacggc
atctccaagctggtgcccggcaagcctgggatgtcgtacacgctggcctatccgcccgag
gtgaagaaggacggcgacaagaacaactacgcgctcgagctcgagcccctgctctacgaa
cgcgtgcgcgccgaggaggatgtgcgcaccgtcatcgaaatggcgcagaagctcgaaggc
atgacgcgcaacatcggcatgcatgccggcggcgtgctgatcgcgccgggcaagctcacc
gacttctgtccgctgtaccagcagcccggcagcgaatcggcggtgagccagtacgacaag
gacgacgtggaggccatcggcctggtgaagttcgactttctgggcctggccacgctgacc
atcctcgagatcgccaaggagttcatcgtcaagcggcacaagggccaggagaacttcgcg
ttcgagaacatcccgctggacgacaagccgacctaccggctgttccaggaaggcaagacc
gaagccgtgttccagttcgaaagccgcggcatgcagggcatgctgaaggacgccaagccc
acgcggctggaggacctgatcgcgctcaacgccctgtaccgtccggggccgatggacctg
atcccgagcttcgtggcgcgcaagcacggccgcgaggaggtggagtatccgcacccggcg
gtggccgagatgctgagcgagacctacggcatcatggtctaccaggagcaggtgatgcag
accgcgcagatcctgggcggctacagcctgggcggcgccgacctgctgcgccgcgccatg
ggcaagaagaaggccgaggagatggccgagcaccgcgagaagttccgcgccggcgccctg
gccacgcatggcatcgaacaggccaaggccgacgagattttcgacctgatggagaagttc
gcgggctacggcttcaacaagtcgcacgccgccgcctattcgctcctggcctaccacacc
ggctggctcaaggtgcactacgccgccgagttctactgcgccaacatgacggtggaaatg
gacaacaccgacaagctcaagctgctctatgaagacgcggtgaagatgggactgacgttc
gagccacccgacgtgaaccgcggccgctaccgcttcgagccggtgaccgacaaggtgatc
cgctacgggctgggcgcggtcaagggcacgggccagcaggccatcgatgccatcgtcgcc
gcgcgggaagagggcgggcctttcaagagcctgttcgacttctgcctgcgggtggaccgc
gccaggctcaacaagcgcacggtggaagccctgatcaaggccggcgccttcgacgcgctg
catctgaaccgcgccgaactcgtggcctcgatcgaccgcgcgttcgcctttgccgccgcc
gcggcggccaacgcggggcagggcggactgttcgacatgatggacgatggccacggatca
agcaccgaggagccaggcctggtcgagaccacgccgtggggcgtgaaggagcagctgacg
ctggagaagaccgcggtcggcttctacctgtcgggccatctgttcgatgaagtgaaggcc
gaggtgcggcagttcgccaagcggcaggtggccgacgtggtggacgggcgcgacccggtg
ctgctggccggcatcgtcagcgaactgcgcgtgatcaacgggcaacgcggcaagctcggc
ctgttccgcttcgacgacggcaccggcatgctcgacgcccgcgtgtccgaggcggtcatg
aacgccaacaagaacctgttcagggaggacgagctgatcatcgtcatgggcaaggtgcag
gtcgaccgcttcggcggcggcgggctgcagctcaccgtggtcgaggcctgggacctggcg
acggcgcgctgccggttcggcaagttcctgcgcgtgacggtggcgcccggcgagaaggct
gcggcgcccgacatcgcgcgcgtggtcaaggaattcccgccgaagcgggagatgtccgac
cacggcgacatcctgcgcggcctgatggtgcggctgcaggtgcagcgccgcacggaccgc
ggcgcggcgggcgcggaactccagctcggcgaggaggcgcggttctttccgaccgatgag
gcgttggccagctggcagatcggcacggggcgggcggagatcgtgtacgaggcctga
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