KEGG   Rhodoferax koreensis: RD110_14845
Entry
RD110_14845       CDS       T04721                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhy  Rhodoferax koreensis
Pathway
rhy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RD110_14845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhy03400]
    RD110_14845
Enzymes [BR:rhy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RD110_14845
DNA repair and recombination proteins [BR:rhy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RD110_14845
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase Planc_extracel
Other DBs
NCBI-ProteinID: APW38310
UniProt: A0A1P8JX24
LinkDB
Position
complement(3207680..3210172)
AA seq 830 aa
MDDLLTRYKAKRNFDITSEPAEGGESKDGQLAFVIQKHWASRLHYDFRLELGGAMKSWAV
PKGPSYDPKDKRMAVQVEDHPIAYNQFEGEIPAGQYGAGKVIIWDEGTWTPLGDAAKGYR
DGNLKFEMHGRKIQGHWALIRMKGKGEKQPPWLLIKEKDAFARPAADFSVVDEMPDSVVP
LRSKTRTPAKAAKVRASETPGEKAALPATIQPQLATLVDGVPGDPSQWLFEIKFDGYRML
ARVEGKTVQLFTRNGHDWTHKLPHLAKAIAKLKLKSGWLDGEIVVANDKGVPDFQRLQNA
FDSSETESIVYYLFDAPFLDGRDLRHEPLETRRALLKGLFDEKTPPSLRFSDVFDVRPQD
LVASACRMGLEGVIGKKKDAPYSSRRSPNWIKLKCTQRQEFVIGGYTDPQGTRTALGSLL
LGVHDDKGALVYAGNVGTGFDQKTLGELKARLDAVAADQSPFSAKTDLDRKAHWVKPQLL
AEVSFGEWTGSGRIRHAVFHGLREDKKPLAIKREKPVHAVAERGAASKAKAAVPRSKLHV
THPERVIDPSTGLTKLDVVRYYALIAPLLLPHLKGRPVSLVRAPGGIQGELFFQKHMEGK
MPGVKPLSQALDPDHAPLMEVPTAQAVLSAAQMNVIEFHTWNGVKTAIDKPDRMTFDLDP
GEGVAWESMQQAAKLVHEFLTQLGLESFVKTSGGKGLHVVVAVKKQHDWDTVKAFSQAVV
QHLAKTLPQLFVAKSGPKNRVGKIFVDYLRNGFGATTASAWSARARPGLGVSVPMAWDEL
DSIGSGAHWTITNIQTRLHRGNSPWDAYAPQSLSKAMKLLDFKPSASKSS
NT seq 2493 nt   +upstreamnt  +downstreamnt
atggacgacctgctgacgcgttacaaggccaagcgcaacttcgacatcacctccgagccg
gcggaaggcggcgaatcgaaagacggccaactcgccttcgtgatccagaaacactgggcc
tcgcgcctgcactacgacttccggctcgaactcggcggcgcgatgaaaagctgggccgtg
cccaaggggccgagctacgaccccaaggacaaacgcatggcggtgcaggtggaagaccac
cccatcgcctacaaccagttcgaaggcgagattcccgcgggccagtacggcgcgggcaag
gtcatcatctgggacgagggcacgtggacgccactcggcgacgcggccaagggttaccgc
gacggcaacctgaagttcgagatgcacggccgaaagatccagggccattgggccttgatc
cgcatgaagggcaagggcgagaaacagccgccctggctgctgatcaaggaaaaggacgcc
ttcgcacgacccgccgcggacttcagcgtggtcgacgagatgcccgatagtgtcgtgccg
ttgcgaagcaagaccaggacgccggcaaaggctgccaaagtcagggcgagcgaaacgcca
ggggaaaaagccgcgctgccagccacgattcagccccagctggccacgctcgtcgatggg
gtgccgggtgatcccagtcaatggttgttcgagatcaagttcgacggctaccgcatgctc
gcgcgtgtggagggcaagacggtgcaactgttcacgcgcaacggccacgactggacccac
aagctgccgcatttggccaaggcgatcgccaaactcaaactcaagtcgggctggctggat
ggcgagatcgtggtggccaacgacaagggcgtaccggacttccagcgcctgcagaacgcg
ttcgacagcagcgagacggaaagcatcgtctattacctgttcgacgcgccttttctcgac
ggccgggatctgcgccatgaaccgctcgaaacccggcgtgcgctgctcaaagggcttttc
gacgagaagacgccgccatcgctgcggttcagcgacgtgttcgacgtacggccgcaggac
ctggtcgcctccgcctgccggatgggcctggaaggcgtcatcggcaagaagaaggacgca
ccctacagcagccggcgttcgcccaactggatcaagctcaagtgcacgcagcgccaggag
ttcgtgatcggcggctacaccgatccgcagggcacgcgcaccgcattgggttcgctgctg
ctgggcgtgcacgacgacaagggcgcgctggtgtatgcgggcaacgtgggcacgggtttc
gaccagaagaccttgggtgaactcaaggcgaggctcgatgccgtggccgccgaccaaagt
ccgttctcggcgaagaccgacctggaccgcaaggcgcattgggtcaagccgcaattgctg
gccgaggtgtcgttcggcgaatggacgggctcgggccgcattcgccatgcggtgttccac
ggcctgcgcgaagacaagaagccgctggcgatcaagcgcgaaaagccggtgcatgccgtg
gctgaaaggggcgctgcatcgaaagccaaggccgcggttccgcggtcgaagctgcacgtg
acgcatcccgaacgcgtcatcgacccctccaccggcctgaccaagctcgacgtggtgcgg
tactacgcgctgatcgcaccgttgctgctgccgcatctcaaggggcgtccggtctcgctg
gtgcgggcgcccggcggcatccagggcgaactcttcttccagaagcacatggaaggcaag
atgcccggcgtcaagccgctgtctcaggcgctcgacccggaccacgcgccgttgatggag
gtgcccacggcacaggccgtgttgtctgccgcgcagatgaacgtgatcgaattccacacc
tggaacggcgtgaagaccgccatcgacaagcccgaccgcatgaccttcgacctcgacccc
ggtgaaggcgtcgcctgggagagcatgcagcaggccgcgaagctggtgcatgagttcctc
acgcagctcggcctcgaatccttcgtcaagaccagtggcggcaagggcctgcatgtggtg
gtggccgtgaagaaacaacacgattgggacacggtgaaggcgttttcgcaggccgtggtg
cagcacctggcaaagacgctgccgcagctgttcgtggccaaaagcgggccgaagaaccgc
gtgggcaaaatcttcgtcgattacctgcgcaacggcttcggcgcgaccacggcttcggcc
tggtccgcacgcgcacggccgggcctgggggtgtcggtgccgatggcctgggacgagctg
gacagcatcggcagcggcgcgcattggaccatcaccaacatccagacgcggctgcatcgg
ggcaactctccatgggatgcctatgcgccgcaaagcctgtccaaggccatgaagctgctc
gacttcaagccttcggccagcaagtcatcttga

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