Rhodoferax koreensis: RD110_16930
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Entry
RD110_16930 CDS
T04721
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rhy
Rhodoferax koreensis
Pathway
rhy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RD110_16930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhy03021
]
RD110_16930
Transcription machinery [BR:
rhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RD110_16930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF6522
TPR
Motif
Other DBs
NCBI-ProteinID:
APW38677
UniProt:
A0A1P8JY53
LinkDB
All DBs
Position
3648728..3651028
Genome browser
AA seq
766 aa
AA seq
DB search
MNPAKTASKATAKPAAKESATPASKVKTVPASKSPAAVKEKAAPVSADDTPAKKKPGRPP
KTVVVATEAKPKPAGAKRGPKPKGSISTEINEDDLIEIEEDPVEEPAPVLTANGEKVKPL
RMKISKAKERALMKEFGLDETVLSEEDMAKRRLRLKALIKLGKTRGYLTHGEISDHLPDK
LIDAETLEAVINTLNDLGVAVYEQTPDAESLILTNNAPAGSTEEEAEEAAEAALSTVDSE
FGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMRMMEAISASPATLAEVFRLGEE
IREGKIVISTVVDGFSNPNEADDYVAEEDFDEFDAADDDDGKGGSKALTKKLEELKVEAL
TRFDRLRGLFEKVHKIYDKEGYGTPHYAKAQAALSEELMTIRFTAKTIEKLCDLLRTQVD
DVRKKERELRRIIVDKCGYPQEQFIADFSGRDKMGNKVPSHLLDLKWIEKQAASGKPWAA
IMARNIPPVQDLQQKLTDLQARVVVPLDELKGINKRMNEGEASSRDAKKEMIEANLRLVI
SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
TIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAEKMEIPEDKIRKIMKIAKEPISME
TPIGDDDDSHLGDFIEDGANTAPIEAAMQAGLRDVVKDILDSLTPREAKVLRMRFGIEMS
TDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDTL
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccccgccaaaacagcctccaaggccacggccaagcccgccgccaaggagtccgcc
acgcccgcctcgaaagtcaaaacagtgccagcatcgaagtcccctgccgccgtcaaggaa
aaagccgctcccgtgtccgccgacgacacgcctgcgaagaagaagccgggccgtccgccc
aagacggtggtggtcgcgaccgaagccaagcccaagccggccggcgccaagcgcgggccc
aagcccaagggctcgatctcgaccgagatcaacgaagatgacctgatcgagatcgaggaa
gacccggtcgaggaaccggcgccggtgctcacggccaacggcgaaaaggtcaagccgctg
cgcatgaagatcagcaaggccaaggaacgggccttgatgaaggagttcggcctcgacgag
accgtgctttccgaggaagacatggccaagcgccgcctgcggctgaaggcgctgatcaag
ctcggcaagacgcgcggctacctcacgcacggcgaaatctccgaccacttgcccgacaag
ctgatcgacgcggaaacgctcgaggccgtcatcaacacgctgaacgacctgggcgtggcg
gtgtacgagcagacgcccgacgccgaatcgctgattctgaccaacaacgcgccggccggc
agcaccgaagaagaagccgaggaagccgccgaggccgcgctgtccaccgtggacagcgag
ttcggccgcaccaccgacccggtgcgcatgtacatgcgcgagatgggcacggtcgagctg
ttgacgcgtgaaggcgaaatcgaaatcgccaagcgcatcgaaggcggcctgatgcgcatg
atggaagccatcagcgccagccccgccacgctggccgaggtgttccgcctgggcgaggaa
atccgcgaaggcaagatcgtcatctcgaccgtggtggatggcttctccaacccgaacgaa
gccgacgattacgtggccgaagaagacttcgacgaattcgacgcggccgacgacgacgac
ggcaagggcggctccaaggcgctgaccaagaagctcgaggaactgaaggtggaggcgctc
acgcgcttcgaccggctgcgcggcctgttcgagaaggtccacaagatctacgacaaggaa
ggctacggcacgccgcactatgccaaggcccaggccgccctgagcgaagagctgatgacc
atccgcttcaccgccaagaccatcgagaagctgtgcgacctgctgcgcacccaggtggac
gacgtgcgcaagaaagaacgcgaactgcgccgcatcatcgtcgacaagtgcggctatccg
caggaacagttcatcgctgacttcagcggccgcgacaagatgggcaacaaggtgccgtcg
cacctgctcgacctcaagtggatcgagaaacaggccgcgtccggcaagccctgggccgcg
atcatggcgcgcaacattccgccggtccaggacctgcagcagaaactgacggacctgcag
gcgcgcgtggtggtgccgctggacgaactcaagggcatcaacaagcgcatgaacgaaggc
gaggcctcgtcgcgcgatgccaagaaggaaatgatcgaggccaacctgcgcctggtgatc
tccatcgccaagaagtacaccaaccgcggcctgcagttcctcgacctgatccaggaaggc
aacatcggcctgatgaaggccgtggacaagttcgaataccgccgcggctacaagttctcg
acctatgccacgtggtggatccgccaggccatcacgcggtccatcgccgaccaggcgcgc
accatccgcatcccggtgcacatgatcgagaccatcaacaagatgaaccgcatcagccgg
cagcatctgcaggagttcggcttcgaacccgatgcctcgatcctggccgagaagatggag
atcccggaagacaagatccgcaagatcatgaagatcgccaaggaaccgatctcgatggaa
acaccgatcggcgacgacgacgacagccacctcggcgacttcatcgaagacggcgccaac
accgcgccgatcgaagccgccatgcaggccggcctgcgcgacgtggtcaaggacatcctc
gactcgctcacgccacgcgaagccaaggtgctgcgcatgcgcttcggcatcgagatgagc
accgaccacacgctggaagaagtcggcaagcagttcgacgtgacgcgcgaacgcatccgc
cagatcgaagccaaggcgctgcgcaagctcaagcacccgagccgcagcgacaagctgcgc
agcttcatcgacacgctgtaa
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