Rhodoferax koreensis: RD110_17740
Help
Entry
RD110_17740 CDS
T04721
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy03410
Base excision repair
rhy03430
Mismatch repair
rhy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RD110_17740
03430 Mismatch repair
RD110_17740
03440 Homologous recombination
RD110_17740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhy03400
]
RD110_17740
DNA repair and recombination proteins [BR:
rhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RD110_17740
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RD110_17740
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RD110_17740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
APW38823
UniProt:
A0A1P8JYJ0
LinkDB
All DBs
Position
3830876..3832597
Genome browser
AA seq
573 aa
AA seq
DB search
MKITARDIPPRAVWALQQAGIHPLLAQLYAARGVLGQEELDDALHRLLPPSGMKGMAAAA
ALLADAIQADRRICIVADYDCDGATACAVGVRGLRLLGAKHVSYIVPDRVVDGYGLTAPI
ARRVKDAGADLLVTVDNGIASVEGVATARALGLQVLVTDHHLPGPELPDAEVIVNPNQPG
CTFESKAMAGVGVMFYVLLAARAELRAREVFTSADQPKLDVLLPLVALGTVADVVKLDTN
NRRLVAQGLKRIRAGAMPAGVNALFVAAGRKAAVATTFDFGFALGPRINAAGRLSDMTLG
IECLLTDDPAQAQALAQTLDGINRERRDIEGGMREQAMQVCESLFGREDGDGETPPAVCV
FDPDFHEGVVGIVASRLKDRFHRPTFVFAASQAPGKEHELKGSGRSIPGFHLRDALDLVA
KRHPGVLLRFGGHAMAAGCTIDADRLDEFEQGLTQVAQEWLDAATLTRRLDTDGPLAPEY
RRAELVDVLHREVWGQGFAPPTFSEELEVVSQRLVGEKHLSLKLKHQGQPVDGIWFGHTE
ALPSKVTLAFRLDVNEWQGQRRVQFLVEGAAED
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcacagcacgcgacatcccgccgcgcgctgtctgggcgctgcagcaggccggc
atccatccgcttttggcgcagctttatgccgcgcgcggtgtgctcggccaggaagagctc
gacgacgcgctgcaccggctcttgccgccttccggcatgaagggcatggcggcggccgcg
gcgctgctggccgatgccatccaggccgaccgccgcatctgcatcgtcgccgactacgac
tgcgacggcgccaccgcctgcgcggttggcgtgcgcggcctgcgcctcctgggcgcaaaa
cacgtgagctacatcgtgccggaccgcgtggtcgacggctacggcctgaccgcgccgatc
gcgcgccgcgtgaaggacgccggcgccgacctgctggtcaccgtggacaacggcatcgcc
agcgtcgagggcgtggccacggcgcgcgcgctcggcctgcaggtgctggtgaccgaccac
cacctgcccggccccgagctgccggatgccgaagtcatcgtcaacccgaaccagcccggc
tgcaccttcgagagcaaggccatggccggcgtgggggtgatgttctacgtgctgctggcg
gcccgcgccgaactgcgcgcacgcgaggtattcacgagtgccgatcagccgaagctcgac
gtgctgctgccgctcgtcgcgctcggcaccgtggccgacgtggtgaaactcgacaccaac
aaccgccgcctcgtggcccaggggctcaagcgcatccgcgccggcgccatgcccgccggc
gtgaacgcactgttcgtcgcggccggccgcaaggccgccgtggccaccaccttcgacttc
ggcttcgcgctcggcccacgcatcaatgccgcgggccgcctctcggacatgacgctcggc
atcgaatgcctgctgaccgacgacccggcccaggcccaggcgctggcgcagacgctggac
ggcatcaaccgcgagcggcgcgacatcgagggcggcatgcgcgagcaggcgatgcaggtc
tgcgaatctctgttcggccgtgaagacggcgacggcgaaacacccccggccgtctgcgtg
ttcgacccggacttccacgaaggcgtggtcggcatcgtggcctcgcgtctcaaggaccgc
ttccaccgccccaccttcgtctttgccgccagccaggcgcccggcaaggaacacgagctc
aagggctcgggccgctccatccccggtttccacctgcgcgacgcgctcgacctggtggcc
aagcgccaccccggcgtgctgctgcgcttcggcggccacgccatggcggccggctgcacc
atcgacgcggaccgcctcgacgaatttgaacagggcctgacccaggtggcccaggaatgg
ctggacgccgccaccctcacccgccgcctggacaccgacggcccgctggcccccgaatac
cggcgcgccgaactcgtcgacgtgctgcaccgcgaagtctggggccagggtttcgcgccg
ccgaccttcagcgaggagctcgaggtggtgtcgcagcgcctggtcggcgaaaagcacctg
tcgctcaagctcaagcaccaggggcagccggtggatggcatctggttcggccataccgag
gcgctgccctcgaaggtgacgctggcgttccggctcgatgtcaacgagtggcaggggcag
cgccgggtgcagttcctggtggagggggcggcggaggattag
DBGET
integrated database retrieval system
