Rhodoferax koreensis: RD110_19340
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Entry
RD110_19340 CDS
T04721
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhy
Rhodoferax koreensis
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhy03032
]
RD110_19340
03400 DNA repair and recombination proteins [BR:
rhy03400
]
RD110_19340
Enzymes [BR:
rhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RD110_19340
DNA replication proteins [BR:
rhy03032
]
Prokaryotic type
DNA Topoisomerases
RD110_19340
DNA repair and recombination proteins [BR:
rhy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RD110_19340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
APW39099
UniProt:
A0A1P8JZB8
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All DBs
Position
4159119..4160318
Genome browser
AA seq
399 aa
AA seq
DB search
MATEKSPSSKNASVSSLRYVSDEIPGLTRLRKGDAFRYRDSEGRWLTDDDDIDRINKLAI
PPAYTSVWICPWPDGHLQATGIDSRGRKQYRYHPQWNAERDENKFERLEAFSLVLPRIRA
HVARDLVPMRGEPLSRTVVLATLVRLLDTTLVRVGNDAYLRSNGSYGLTTLRTPHAVARG
SVVQLRFRGKSGVMHDVNLDDPRVAKVVRRCQQLPGQELFQYLDEEGQTHTLGSSDVNDY
IAEAAGARFTAKDFRTWHGTVKALELTYEARTRQADERFDVKTVVEEVSQLLGNTPAVCR
KAYIHPAVLELGTELAADPTSGSAIWRRLAGIQSQRRLSAAEGRLQAFLRLNRRGSRLSR
PPVKQRAATAEGKRVKASAKPAVKPSVKTAKATKAAETA
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgaaaaatccccttcgtccaagaatgcaagcgtgtcgtcgctgcgctatgtc
agcgatgagataccgggcctgacccgcctgcgaaagggcgatgcgttccgctaccgcgac
agcgaaggacggtggctgaccgacgacgacgacatcgaccgcatcaacaagctggcgatc
ccgccggcctacacgtccgtgtggatctgcccctggcccgacggccacctgcaggccact
ggcatcgattcgcgcgggcgcaagcagtaccgctaccacccgcagtggaacgccgaacgc
gacgagaacaaattcgaacggctcgaggctttcagcctggtgttgccgcgcatccgcgcc
cacgtggcgcgcgacctcgtgccgatgcggggcgaaccgctgagccgcaccgtcgtgctg
gccacgctggtgcgcctgctcgacacgacgctggtgcgcgtgggcaacgacgcgtacctg
cgcagcaacggctcctacggcctcaccaccctgcgcacgccacatgcggtcgcgcgcggc
agcgtggtgcaactgcgctttcgcggcaagagcggcgtgatgcacgacgtgaacctggac
gacccgcgggtcgccaaggtggtacgccgctgccagcagttgccggggcaggagttgttc
cagtacctcgacgaggaaggccagacgcacacgctgggctccagcgatgtgaacgactac
attgccgaagcggccggtgcgcgtttcaccgccaaggatttccgtacctggcatggcacg
gtgaaggcgctggaactgacctacgaggcgcggacgcgccaggcggatgaacggttcgat
gtgaagacggtggtggaagaagtctcgcaactgctaggcaacacgccggcggtctgccgc
aaggcctacatccatccggcggtgctcgagctcggtaccgaactcgcggccgatccgaca
tcgggcagcgccatctggcggcgcctggccggcatacagtctcagcgcagactcagcgcc
gccgaaggccggctgcaggcctttcttcggttgaatcgccgtgggtcgcggctgtcacgc
cccccggtgaaacagcgcgccgccacggccgagggcaaacgcgtgaaggcttcggccaaa
ccggcggtcaagcccagcgtgaagaccgccaaggccaccaaggccgccgagacggcctga
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