Rhodoferax koreensis: RD110_19680
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Entry
RD110_19680 CDS
T04721
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rhy
Rhodoferax koreensis
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rhy03009
]
RD110_19680
Enzymes [BR:
rhy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RD110_19680
Ribosome biogenesis [BR:
rhy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RD110_19680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
TRAM
Methyltransf_11
MTS
Methyltransf_23
TPMT
PCMT
Motif
Other DBs
NCBI-ProteinID:
APW39159
UniProt:
A0A1P8JZJ1
LinkDB
All DBs
Position
complement(4240866..4242269)
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AA seq
467 aa
AA seq
DB search
MTEPTEKTSTLPPGWLDIESLDIEAKGIAHREDGKVVFVEGALPFEQVSASIHRRKNNWE
AGTVTAIHRESSQRVRPQCPHFGLHPGACGGCKMQHLHPAAQVAVKQRVLEDNLWHLGKV
KSETVARPIEGPAWGYRYRARLSVRHVLKKGTVLVGFHERSSRYVADIRECHVLPPHVNA
MLLPLRALVGAMDAINTVPQIELACGDDVTALVLRHLEPLSEDDLARLRAFALEHGVQWW
LQSKGPDTVKLLDADGAQLGYALPDFDIQMPFKPTDFTQVNPHINRVLVSKALRLLDAQK
TERVIDWFCGLGNFTLPLATQAREVLGIEGSETLVARSRENYEKNNARLGTERALAATKF
VARNLFEMTPEMLIADGSADKWLVDPPREGAFALAKALADLNQQRELRQGWTPPRRIVYV
SCNPATLARDAGLLVALGGYRCVSAGVVNMFPHTAHVESMAVFELAE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcccacagaaaaaacgtcgaccctgccgccaggctggcttgacatcgaatcc
ctcgacatcgaggccaagggcatcgcccaccgcgaggacggcaaggtcgtctttgtcgag
ggcgcgctgcctttcgaacaggtcagcgcgagcatccaccgccggaagaacaactgggag
gcgggcaccgtcaccgccatccaccgtgaatcttcgcaacgcgtgcggccccagtgcccg
cacttcggcctgcacccgggggcctgcggcggctgcaagatgcagcacctgcacccggcc
gcgcaggtcgcggtgaagcagcgcgtgctcgaggacaacctctggcacctgggcaaggtc
aaatccgaaaccgtcgcgcggcccatcgaagggccggcctggggctaccgctaccgcgcg
cggctgtcggtgcggcatgtgctcaagaagggcaccgtgctcgtcggcttccacgaacgc
agcagccgttacgtggccgacatccgcgaatgccatgtgttgccgccgcatgtgaacgcc
atgctgctgccgctgcgcgcgctggtcggcgcgatggacgcgatcaacaccgtgccccag
atcgaactggcctgcggcgacgacgtaaccgccctggtgttgcgccacctcgagccgctg
agcgaagacgatctggcgcgcctgcgcgccttcgcgctggaacatggcgttcagtggtgg
ctgcagtccaaggggcccgacacggtcaagctgctggatgccgatggggcgcaactgggc
tatgcgctgccggacttcgacatccagatgccgttcaagccgaccgacttcacccaggtc
aaccctcacatcaaccgcgtgctggtgtccaaggcgctgcgcctgctcgacgcgcagaag
accgaacgggtgatcgactggttctgtggcctgggcaacttcacgttgccgttggccacg
caggcgcgtgaggtgctgggcatcgagggcagcgaaaccctggtcgcgcgctcgcgcgaa
aattatgagaagaacaatgctcgactgggcacggaaagggcgctggcagctaccaaattc
gtagcacgcaaccttttcgagatgacgccggagatgttgatcgccgacggctcggccgac
aagtggctggtcgatcctccgcgcgaaggcgcattcgcgctggccaaggccctggccgac
ctgaaccagcagcgcgagttgcgtcagggctggacgccgccacggcgcatcgtctatgtg
agctgcaacccggccacgctggcgcgcgatgcggggctgctggtggcgctgggtggctac
cgttgcgtgtcggccggggtggtgaacatgttcccgcacacggcgcacgtggagagcatg
gcggtgttcgagttggccgagtaa
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