Rhodoferax koreensis: RD110_20115
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Entry
RD110_20115 CDS
T04721
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy03420
Nucleotide excision repair
rhy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RD110_20115
03430 Mismatch repair
RD110_20115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhy03400
]
RD110_20115
Enzymes [BR:
rhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RD110_20115
DNA repair and recombination proteins [BR:
rhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RD110_20115
MMR (mismatch excision repair)
Other MMR factors
RD110_20115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Catalase_C
Motif
Other DBs
NCBI-ProteinID:
APW39234
UniProt:
A0A1P8JZQ1
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All DBs
Position
complement(4334390..4336858)
Genome browser
AA seq
822 aa
AA seq
DB search
MFSANPNPVSGHVAAPLGSNSPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRI
AWLLQTGQVTPGGILAVTFTNKAAKEMMTRLAAMLPVNVRGMWIGTFHGLCNRFLRAHYK
LANLPQSFQILDTQDQLSAIKRLMKQFNVDDERFPAKQTQYFIAGCKEDGLRPNMVEARD
AETLKKIEIYQLYEEQCQREGVVDFGELMLRSYELLRDNDPIREHYQRRFRHILIDEFQD
TNTLQYAWIKMLSGHGPADIESGAALRHAPGSVLAVGDDDQSIYAFRGARVGNMADFVRE
FNVTRQIKLEQNYRSGSNILDSANALISHNSKRLGKNLRTEQGPGEPVRVVESPRDYDEA
QWLVDEVKQLVRDDHERKEIAVLYRSNAQSRVIETALFNAAVPYRVYGGLRFFERAEIKH
ALAYLRLLENANDDTSFLRVVNFPPRGIGARSIEQLQDAAKAAGCSLHDAVSSLGGKAGT
NIGGFVAKLDVMREQTAGQTLREIIELVLDHSGLVEHYKADREGADRLENLAELVNAAES
FVSQEGFGRDAVALPVDELGGGALSQSPASQGIDPNLATDDLPPSYIDQDSGETLSPLAA
FLTHAALESGDNQAQAGQDAVQLMTVHAAKGLEFDAVFVTGMEEGLFPHENSMSDRTALE
EERRLMYVAITRARKRLYLSFSQTRMLHGQTRYHIKSRFFEELPEGALKWITPKQPGFAS
GMGGGCSGGFARNSGAGSEGYASARGAFNAQTATFASPPVPPQKAAPSHGLKVGMKVFHN
KFGEGKVQTLEGAGDDARAQINFPRHGVKWLALSVAKLTVVD
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgttctcagcaaatccaaatcccgtctcgggtcatgtcgcagcgccccttggttcgaac
tcgccgctgctgcacaacctcaatcccgagcagctggccgccgtcacgctgccggctgaa
cacgcgctgatcctggccggcgccggctcgggcaagacacgggtgctgaccacccgcatc
gcctggttgctgcagaccggccaggtcacgcccggcggcatcctggccgtgaccttcacc
aacaaggccgccaaggaaatgatgacgcggctggccgccatgctgccggtgaacgtgcgc
ggcatgtggatcggtaccttccacggcctgtgcaaccgcttcctgcgtgcgcactacaag
ctggcgaacctgccgcagagcttccagatcctggacacgcaggaccagctcagcgcgatc
aagcggctgatgaagcagttcaacgtcgacgacgaacgttttccggccaagcagacgcag
tacttcatcgccggctgcaaggaagacggcctgcgcccgaacatggtggaggcgcgcgat
gcggagacgctgaagaagatcgagatctaccagctctacgaagagcagtgccagcgcgaa
ggcgtggtcgacttcggcgagctcatgctgcgcagctacgaactgctgcgcgacaacgac
ccgatccgagagcactaccagcggcgcttccgccacatcctgatcgacgaattccaggac
accaacaccctgcagtacgcgtggatcaagatgctgtcgggccacgggccggccgacatc
gaatccggcgcggccttgcgccatgctccgggcagcgtgctggccgtgggcgacgacgac
cagagcatctacgccttccgcggcgcgcgcgtgggcaacatggccgacttcgtgcgcgag
ttcaacgtgacgcggcagatcaagctcgagcagaactaccgcagcggcagcaacatcctg
gattcggccaacgcgctcatcagccacaacagcaagcgcctgggcaagaacctgcgcacc
gagcagggcccgggcgagccggtgcgcgtggtcgagagcccgcgcgactacgacgaggcg
caatggctggtcgacgaggtcaagcagctggtgcgcgacgaccacgagcgcaaggagatc
gccgtgctctaccgcagcaacgcgcagagccgggtgatcgagaccgcgctgttcaacgcc
gccgtgccgtaccgcgtgtatggcggcctgcgcttcttcgaacgcgccgaaatcaaacac
gcgttggcctatctgcgcctgctggagaacgccaacgacgacaccagtttcctgcgcgtg
gtgaattttccgccgcgcggcatcggcgcgcgcagcattgagcagctgcaggacgcggcc
aaggccgcaggctgttcgctgcacgacgccgtgagcagcctcggcggcaaggccggcacc
aacatcggcggcttcgtggccaagctggacgtgatgcgcgagcagaccgcaggccagacg
ctgcgcgagatcatcgaactcgtgctcgaccacagcggcctggtcgaacactacaaggcc
gaccgcgaaggcgccgaccggctggagaatttggccgaactcgtgaacgcggccgaaagt
ttcgtctcgcaggaaggcttcggccgcgacgccgtggcgctgccggtggatgaactcggc
ggtggcgccctgtcgcagtcgcccgccagccagggcatcgacccgaacctggctacggac
gatcttccgccgagctacatcgaccaggacagcggcgagaccctgtcgccgctggccgcc
ttcctgacccatgccgcgctcgaatccggtgacaaccaggcccaggctgggcaggatgcc
gtgcaactcatgaccgtgcatgccgccaagggcctggagttcgacgccgtgttcgtcacc
ggcatggaggaggggctgttcccgcacgaaaattccatgagcgaccgcaccgcgctcgag
gaagagcgccggctgatgtatgtggccatcacgcgcgcgaggaagcgcctgtacctgagc
ttctcgcagacgcgcatgctgcacgggcagacgcgttaccacatcaagagccgcttcttc
gaggaactgccggaaggcgcgctgaagtggatcacgccgaaacagcccggtttcgcctcg
ggcatgggtgggggctgcagtggcggctttgctcgcaattcaggagcgggcagcgaaggc
tacgccagcgccagaggcgctttcaatgcacagaccgccaccttcgccagcccgcccgtg
ccgccgcagaaggccgcgccttcacacggcctgaaggtcggcatgaaggtgtttcacaac
aagttcggcgagggcaaggtgcagacgctcgaaggcgcgggcgacgatgcgcgcgcgcag
atcaacttcccgcgccacggggtgaagtggctggcgctgagcgtggcgaagttgacggtg
gtggattga
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