Rhodoferax koreensis: RD110_21525
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Entry
RD110_21525 CDS
T04721
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy00300
Lysine biosynthesis
rhy00470
D-Amino acid metabolism
rhy01100
Metabolic pathways
rhy01110
Biosynthesis of secondary metabolites
rhy01120
Microbial metabolism in diverse environments
rhy01230
Biosynthesis of amino acids
Module
rhy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RD110_21525
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RD110_21525
Enzymes [BR:
rhy01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RD110_21525
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Gene cluster
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
APW39478
UniProt:
A0A1P8K0E2
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All DBs
Position
complement(4639660..4640898)
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AA seq
412 aa
AA seq
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MTERTPPVHASLPQFPISGGELVVGGERLSLLAARVGQTPFYAYDRGHLRQRVAELRAAL
PRSVKLHYAMKANPMPAVVGLMAGLVDGIDVASAGELKVALDAGADPREVSFAGPGKREI
ELQQAVASRVLINVESMREVTLLDGISQRLGLPARVAVRVNPDFELKGSGMKMGGGPKQF
GVDVEAMPELLAAVGRAGLSFEGFHLFAGSQNLRAESICEAQQKSYALAVRLAQDAPAPV
RFLNLGGGFGIPYFPGEQRLDLQPIGDNLAALAAQASAELPEAAFVIELGRYLVGEAGIY
VARVIDRKVSRGQVFLVTDGGLHHHLSASGNFGQVVRKNYPVTIGNKADAALREPASVVG
PLCTPLDLLADRMDLPAAVEGDLVVVFQSGAYGASASPHGFLGHPPCVEVLV
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacgcactccacccgtccatgcctcgctgccccagttcccgatcagcgggggc
gagttggtcgttggcggcgaacgcctgtcgttgcttgcggcgcgcgtcgggcagacacct
ttctacgcctacgaccgcggtcacctgcgccaacgcgtggccgaattgcgtgcagccttg
cctcgcagcgtcaagttgcactatgcgatgaaggccaacccgatgccggccgttgtcggc
ctgatggccggactggtggacggaatcgacgtggcctcggcgggcgaactcaaggtggcg
ctggacgccggggccgacccgcgcgaggtcagcttcgccggccccggtaaacgcgagatc
gaattacaacaggctgtggcttcgcgggtgctgatcaacgtggagtccatgcgcgaggtg
acgttgctcgacggcatttcgcagcggctcgggctgcccgcgcgggtcgcggtgcgcgtc
aatcccgatttcgagctcaagggatcgggcatgaagatgggtggcggccccaagcagttt
ggcgtggacgtggaggccatgcccgaactgctcgccgctgtgggccgcgccgggctctcg
ttcgaggggtttcacctgtttgccggctcgcagaatctgcgtgccgagtcgatttgcgag
gctcagcaaaagtcttacgcgctggcggtaaggcttgcgcaggacgcgccggcgcccgtg
cgtttcctcaatctcggcggtggcttcggcatcccctattttccgggcgagcagcggctc
gatctgcagcccatcggtgacaacctggccgcactcgctgcccaggcctccgccgaattg
cccgaagccgcctttgtcatcgaactcggccgttacctcgtcggcgaggctgggatctac
gtggcacgcgtcatcgaccgcaaggtgtcgcgaggccaggtgttcctcgtgacggacggc
ggcttgcaccaccatctctcggcctccggcaatttcggccaggtggtgcgcaaaaactat
ccggtgaccatcggcaacaaggccgacgccgcgttgcgcgagccggcttcggtggtcggt
ccgctgtgcacgccgctcgatctgctggccgaccgcatggacctgccggcggccgtggaa
ggcgacctggtggtcgtgttccagtcgggcgcctacggcgcgagcgccagcccgcacggc
ttcctcggccatccgccgtgcgtcgaggtgctggtttaa
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