Rhodoferax koreensis: RD110_22965
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Entry
RD110_22965 CDS
T04721
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
rhy
Rhodoferax koreensis
Pathway
rhy02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RD110_22965
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
rhy02022
]
RD110_22965
02035 Bacterial motility proteins [BR:
rhy02035
]
RD110_22965
Two-component system [BR:
rhy02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
RD110_22965
Bacterial motility proteins [BR:
rhy02035
]
Pilus system
Twitching motility proteins
RD110_22965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
VpsR
AAA
HTH_30
AAA_7
AAA_16
HTH_28
Motif
Other DBs
NCBI-ProteinID:
APW39707
UniProt:
A0A1P8K135
LinkDB
All DBs
Position
4961287..4962810
Genome browser
AA seq
507 aa
AA seq
DB search
MASTSTAAAILVVDDEPDLRTLYELTLLREGYRIDTAADLHEARQLLQEKRFDAVITDMR
LPDGLGLELLLNLKAQQRSERCIVMTAYGSAENAVEALKAGAFDYLTKPVDLKQFRAVVA
SALVGAATAPAALSGASTQAPLAPAAPAPRPEAATPRSAAGHHALQKLVGDSDAMLAVKQ
RITKVARSMAPVLVRGESGTGKELVAQALHANSHRAMGPLVAVNCSAIPEALLEAEFFGA
KKGSYTGALQDRLGYFQAARGGSLFLDEIGDLPLAMQSKLLRAIQERSVRSLGSTSEESV
DVRIISATHKDLAAEVKAGRFRQDLYYRLNVIEIAIPPLRERRGDLPALCEALLERIAQE
SHMPVPVLSPALLEQLAGHPLVGNVRELENLLHRAVAMSDGEALHVDFEVTQALTALAPL
AEEPGQPTAAGDAGSAQPPARARAPIPTDLQAYLDQQEREILIKVLRETNFNRTATAARL
GLSLRQIRYRIERLNINAPQDDEAQDE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcctccacttccaccgctgcagccatcctggtcgtcgacgacgagccggacctgcgc
acgctctacgaactcacgctactgcgcgaaggctaccgcatcgataccgcggccgacctg
cacgaggcgcgccagttgctgcaggaaaagcgcttcgacgcggtgatcaccgacatgcgg
ctgcccgacggcctgggcctggaactgctgctgaacctgaaggcgcagcagcggtccgag
cgctgcatcgtgatgacggcctatggctcggccgagaacgccgtggaagccttgaaggcc
ggtgccttcgattacctgacgaaacccgtggacctgaagcagttccgcgccgtggtggct
tctgcgctggtgggcgccgccaccgcgcccgcggccttgtccggcgcatccacgcaggcc
ccgctcgcgccagccgccccggcgcccaggcctgaagccgccacgccccgctctgccgcc
ggccaccacgcattgcagaagctcgtgggcgactccgacgcgatgctggcggtgaagcaa
cgcatcaccaaggtcgcacgcagcatggcgccggtgctggtgcgcggcgagtccggcacc
ggcaaggaactggtggcccaggccctgcacgccaacagccaccgcgccatgggcccgctg
gtggcggtcaactgcagcgccatccccgaagcgctgctggaggccgagttcttcggcgcg
aagaagggctcctacaccggcgcgctgcaggaccggctcggctacttccaggcggcgcgc
ggcggcagcctgttcctcgacgagatcggcgacctgccgctggcgatgcagtccaagctg
ctgcgcgcgatccaggagcgcagcgtgcgttcgctgggttcgaccagcgaggaatcggtg
gacgtacgcatcatcagcgccacgcacaaggacctggccgcggaggtcaaggccgggcgc
ttccggcaggacctgtactaccggctcaacgtgatcgagatcgcgattccgccgctgcgc
gagcgccgcggcgacctgccggccctgtgcgaagccttgcttgagcgcatcgcccaggag
tcgcacatgccggtgcccgtgctgtcgccggcgctgctcgagcaactcgccggccatccg
ctggtcggcaatgtgcgcgaactcgagaatctgctgcaccgcgccgtggccatgagcgac
ggcgaagccctgcatgtggacttcgaggtgacgcaagcactgaccgcgctggccccactg
gccgaggaaccggggcagccgaccgcggccggcgacgccggatcggcccagccgccggcc
cgggcgcgcgcgccgatcccgaccgacctgcaggcttacctcgaccagcaggagcgcgaa
atcctgatcaaggtgctgcgcgagaccaacttcaaccgaaccgccaccgcggcccggttg
ggcctgagcctgcgccagatccgctaccgcatcgagcggctcaacatcaacgcaccgcag
gacgatgaagcccaggacgaatga
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