Rhodoferax koreensis: RD110_23065
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Entry
RD110_23065 CDS
T04721
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rhy
Rhodoferax koreensis
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhy03016
]
RD110_23065
Enzymes [BR:
rhy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RD110_23065
Transfer RNA biogenesis [BR:
rhy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RD110_23065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
ProQ_C
Myosin_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
APW39726
UniProt:
A0A1P8K155
LinkDB
All DBs
Position
4985913..4987985
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AA seq
690 aa
AA seq
DB search
MFALFEEAGKFMAGRVLSEAESSAQVELDSGKRVKVKAANLLLKFEKPAPAVLMRDAQTL
AQTIELDLAWEFAPEEDFGFADLAREYFSAHATQEQQVAALFRLYEAPHYFRRAGKGRFR
KAPAEILQLALAAIEKKQQQLQQIANWAEELGRGECPPAIREQLYKILFKPDKNAPEYKA
VVEASRATHTPPLLLLQKAGAIDSPYQFHWRRFLFENFPKGVGFPALEAPLIKDDLPLSP
VQAYSIDDSATTEIDDALSVQGLGSGTVTVGVHIAAPGLALAPGSAIDQVGRARLSTVYM
PGYKVTMLPDAVVQTYTLQEGRDCPAVSLYVTLDEATLEIKASETRLERVHIAANLRHDQ
LDQVVTAEWLENPGFEHENTDLRPGIEREQLSFLYRLAKHLKALREVVRGKPENFNRPDY
NFRLVGNDGAEPTGNEQVLISTRQRGSPLDLIVAEAMILANSTWGGWMADNGVPGIYRSQ
ASLAPGVKVRMGTKALPHAGIGVKSYAWSTSPLRRYTDLVNQWQIIACARHGKTAALAAP
FKPKDAELFSIISMFDAAYAAYNGYQGGMERFWTLKYLQQNGITEVVGTVFKEGLVRADE
LPLVLPVMGTQDLPRGARVRVKLGAIDEITLDVAGTVLERLDAVADAAPPTAEEELDDEE
DAAAGPIAIAVDMEEAEQTETAAAADNPQP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcattatttgaagaagctggaaaattcatggccgggcgcgtgctctccgaggcc
gagtcgtcggcccaggtggagctcgacagcggcaagcgtgtcaaggtcaaggccgccaac
ctgttgctgaagttcgagaaacccgcgcccgcggtgctgatgcgcgacgcgcagaccctc
gcccagaccatcgaactcgacctggcctgggaattcgcccccgaggaagacttcggcttc
gccgacctggcgcgcgagtatttcagcgcccatgccacgcaggagcagcaggtcgccgcc
ctgttccggctgtacgaggcaccgcactatttccgccgcgcgggcaaggggcgctttcgc
aaggcgccggccgagatcctgcagctggcactggccgcgatcgagaagaagcagcagcag
ttgcagcagatcgccaactgggccgaggaactcggccgcggcgaatgcccgcccgccatc
cgcgagcagctctacaagatcctcttcaagccggacaagaacgcgccggagtacaaggcc
gtggtcgaggcctcgcgcgccacccacaccccgccgctgctgctgctgcaaaaggccggc
gccatcgattcgccctaccagttccactggcgccgcttcctgttcgagaactttcccaag
ggcgtgggctttcccgcgctcgaggcgccgctcatcaaggacgatctgccgctgtcgccg
gtgcaggcctattccatcgacgactcggccaccaccgagatcgacgacgcactgtcggtg
cagggcctgggcagcggcacggtgacggtcggcgtgcacatcgccgccccgggcctggca
ctcgcgccgggcagcgccatcgaccaggtgggccgcgcgcgcctgtccacggtctacatg
cccggctacaaggtgacgatgctgcccgacgcggtggtgcagacctacacgctgcaggag
ggtcgcgactgtcccgccgtgtcgctgtacgtcacgctcgacgaagccacgctggagatc
aaagcctccgagacgcggctcgaacgcgtacacatcgcggccaacctgcgccacgaccag
ctcgaccaggtggtcacggccgaatggctggaaaaccccggtttcgagcatgaaaacacg
gacctccgcccgggaatagagcgcgagcagctatcgtttttataccgattggccaaacac
ctgaaagccctgcgcgaagtggtgcgcggcaagccggagaatttcaaccggcccgactac
aacttccggctggtcggcaacgacggcgccgagcccacgggcaacgagcaggtcctcatc
agcacgcgccagcgcggctcgccgttggacctgatcgtcgccgaggccatgatcctggcc
aacagcacctggggcggctggatggccgacaacggcgtgcccggcatctaccgcagccag
gccagcctcgcgcccggcgtgaaggtgcgcatgggcaccaaggcgctgccgcatgcgggc
atcggcgtgaagagctacgcctggagcacctcgccgctgcgccgctacaccgacctggtg
aaccagtggcagatcatcgcctgcgcgcgccacggcaagacggccgcgctggccgcgcca
ttcaagcccaaggacgccgaactgttctccatcatctcgatgttcgacgccgcctatgcg
gcctacaacggctaccaaggcggtatggagcgcttctggacgctgaagtatttgcagcag
aacggcatcaccgaagtcgtcggcaccgtgttcaaggaaggcctggtgcgcgccgacgag
ctgccgctggtgctgccggtgatgggcacgcaggacctgccacgcggcgcccgggtgcgg
gtcaagctcggcgcgatcgacgagatcacgctcgacgtggccggcacggtgctcgaacgt
ctggacgccgtggccgatgccgcgccaccaaccgccgaagaggaattggacgacgaagaa
gacgcggcagccggcccgattgcgatcgcggtcgacatggaggaagccgaacagacggaa
accgcggccgccgccgataatccccagccgtga
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