Rhodoferax koreensis: RD110_25960
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Entry
RD110_25960 CDS
T04721
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy00550
Peptidoglycan biosynthesis
rhy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RD110_25960
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rhy01002
]
RD110_25960
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rhy01011
]
RD110_25960
Enzymes [BR:
rhy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RD110_25960
Peptidases and inhibitors [BR:
rhy01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
RD110_25960
Peptidoglycan biosynthesis and degradation proteins [BR:
rhy01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RD110_25960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
APW40219
UniProt:
A0A1P8K2J0
LinkDB
All DBs
Position
5617260..5618786
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AA seq
508 aa
AA seq
DB search
MPRLSPPASHRFIARLATICLCVCTVVGVQAVPKAVPHAAAPVMPPEIASALARAKVPRD
AVSLLVAPVDGPESGPPRLALRTDAPMNPASVMKLVTTYAGLDLLGADYTWTTHFYADGP
LADGVLRGNLYIRGGGDPKLVLERVDAMFKALQQRGVREVRGDLVLDNSLFAPVARDPAE
FDGEPLRPYNSTPDALLVNFKALILTFTPDGASGTARVRSEPPLAGVAIDATVPMNTAPC
GDWRGGLQADFGDPSRVTFAGSYSAKCGERVWPLAYADPASYARRALLAMFVAAGGVVDG
TAREGAVPGGARWLMDSPSLPLADIIADVNKFSNNVMAQQIFLTLSAPDTRDVPGKRPAK
GQATQEGSRQAIAAWWPLAMGAARPAVPPPLVENGSGLSRDERITAAGLGRLLRRAAVHP
QATVFLNSLSLAGVDGTALGMRNRGLAPEAMGNARLKTGTLRDVAAVAGYATGRSGQRYV
VVGIVNHPNAGAARPALDALVEWAVKDR
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgccccgactgtctccgcccgcctcacaccgtttcatcgcccggctggccacgatatgc
ctttgtgtttgcacggtggtcggcgtgcaggccgtgcccaaagccgtgccgcacgccgcc
gcgcctgtgatgccgcccgaaatcgccagtgcgctggcccgcgccaaggtaccgcgcgac
gcggtgagcctgctggtggcgccagtggacgggccggagagcggccccccgcggctggcc
ctgcgcaccgacgcacccatgaaccccgcgtcggtgatgaaactcgtcaccacctatgcc
gggctcgacctgctcggcgccgactacacctggaccacccacttctacgccgatggtccg
ctggctgatggcgtgttgcgcggcaacctctacatccgcggcggcggcgaccccaagctg
gtgctggagcgcgtggatgcgatgttcaaggccttgcagcagcgcggggtccgcgaggtg
cgcggcgacctggtgctggacaacagcctgttcgccccggtggcgcgcgatccggccgaa
ttcgacggcgaaccgctgcgcccctacaacagcacgcccgacgccctgctggtgaatttc
aaggcgctgatcctcaccttcacgcccgacggcgccagcggcacggcccgcgtgcgcagc
gagccaccgctggccggcgtggccatcgacgccaccgtgccgatgaacacggccccgtgc
ggcgactggcggggtgggctgcaggccgatttcggcgatccgagccgcgtgactttcgcg
ggcagttattccgccaaatgcggcgaacgcgtctggccgctggcctatgccgacccggcg
agctacgcgcggcgcgcactgctggcgatgttcgtggccgccggcggcgtggtcgatggc
acggcccgcgaaggcgcggtgccgggcggcgcgcgctggctcatggattcgccgtcgctg
ccgctggccgacatcattgccgacgtcaacaagttcagcaacaacgtgatggcgcagcag
atcttcctcaccctcagcgctcccgacacccgcgacgtgccgggcaagcgcccggccaag
ggccaggccacgcaggaggggtcgcgccaggcgatcgccgcctggtggccgctggccatg
ggcgcggcgcggccggccgtgccgccgccactcgtggaaaacggctcgggcctgagccgc
gatgaacgcatcaccgccgccggcctgggccggctgctgcgccgtgcggccgtgcacccg
caggccaccgtgttcctgaactcgctgtcgctggccggtgtggacggcaccgccctcggc
atgcgaaaccgcggcctcgcgccggaggccatgggcaacgcccggctcaagaccggcacg
ctgcgcgacgtggcggccgtggccggctacgccaccggccgcagcggccagcgctacgtg
gtggtgggcatcgtcaaccatccgaacgccggcgcggcgcgcccggcgctggacgccttg
gtggaatgggccgtgaaggaccgctga
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