Rugositalea oryzae: RHPLAN_25640
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Entry
RHPLAN_25640 CDS
T04290
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhz
Rugositalea oryzae
Pathway
rhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHPLAN_25640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhz03019
]
RHPLAN_25640
03400 DNA repair and recombination proteins [BR:
rhz03400
]
RHPLAN_25640
Enzymes [BR:
rhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHPLAN_25640
Messenger RNA biogenesis [BR:
rhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHPLAN_25640
DNA repair and recombination proteins [BR:
rhz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RHPLAN_25640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AMN41002
LinkDB
All DBs
Position
complement(2960141..2961931)
Genome browser
AA seq
596 aa
AA seq
DB search
MQADPLSILKTIYGYDAFRGQQREIIEHVIAGNNAFVLMPTGGGKSLCYQIPALVRSGIG
LVVSPLIALMDDQVAALRQAGVKASALNSQLWGTEKDLLWRDIERGEMDLLYMAPETLLK
SLDRLKSAPLSIIAIDEAHCVSQWGHDFRPEYRALDCLANIFSDVPRMALTATADAPTRA
EIVEHLKIGADNSFVAGFDRPNIRYGAAEKTGATQQMLRFLESRRGESGIVYCLSKRKTE
EVAATLNDHGHTALPYHAGMEMKARQTNQRRFQHEQGLIMVATIAFGMGIDKPDVRFVLH
VDLPGSIEAYYQETGRAGRDGLPSEVLMLYGAGDMALRRRFIDATEAPDARKRMEHRKLD
ALLGFAESCQCRRQVLLRYFGDNCEPCGNCDVCLDPPQTFDGTLDAQKLLSCIYRTGERF
GQAHVISVLLGETDERIERLGHDKLSTFGIGTAHDRNAWRSIIRQLVAHGLIDVDVAGHG
GLSISAKGREFLREKPPLSLRVVKKAKPKGKSARREAKEALPAADRILFDKLRARRLELA
KAGNVPPYVIFHDKTLMEMAARTPRSAAELAGISGVGEAKLARYGEAFLSVIKEHG
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggctgacccgctctccattctgaagacgatttacggctatgacgccttccgcggg
cagcaacgggagatcatcgagcatgtgatcgccggaaacaacgccttcgtcctgatgccg
accggcggcggcaagtcgctctgctaccagatcccggcgctggtccgctcgggcatcggc
ctggtcgtgtcgccgctgatcgccctgatggacgatcaggtggcggcgctcagacaggcc
ggcgtgaaggcttcggcactcaattcccagctctggggcacggaaaaggatcttctctgg
cgcgacatcgagcgcggcgagatggacctcctctacatggcgccggaaacgctgttgaag
agtctcgaccggctgaagtcggcaccgctctccatcatcgccatcgacgaggcccactgc
gtttcacagtggggccatgatttccggcccgagtaccgcgcgctcgactgcctcgcgaac
atcttttccgacgtgccgcgcatggccctcaccgccacggcagacgcaccaaccagagcc
gagatcgtcgaacacctcaagatcggcgctgacaacagcttcgtcgccggcttcgaccgc
cccaacatccgctatggcgccgccgaaaagaccggcgcgacgcagcagatgcttcgcttt
ctcgagtcccgcaggggcgagagcggcatcgtctattgcctgtccaagcgcaagaccgag
gaagtcgccgccaccctcaacgaccacggtcacactgcgctgccctaccatgccggcatg
gaaatgaaggcgcggcaaaccaaccagcgccgcttccagcatgagcaaggcctgatcatg
gtggccaccatcgcgttcggcatgggcatcgacaagcccgatgtgcgctttgtgctgcat
gtcgatttgcccggcagcatcgaagcctactaccaggaaaccggccgcgcgggccgcgac
ggtctgccgtccgaagtgctgatgctctatggcgccggcgacatggcgctgcgccgccgc
ttcatcgacgccacggaggcgcccgatgcgcgcaagcgcatggagcatcgcaagctcgac
gccctcctgggctttgcagagtcctgccagtgccgccggcaggtgctgttgcgttacttc
ggcgacaattgcgagccttgcggcaattgcgacgtctgcctcgacccgccgcagacgttc
gacggcacgctcgacgcccagaagcttctgtcctgcatctaccgcaccggcgagcgcttc
gggcaggcgcacgtcatctcggttctgctcggcgagaccgacgagcgcatcgagcgcctg
ggccacgacaagctgtccacgttcggcatcggcacggcgcacgaccgcaacgcctggcgc
tcgatcatccgccagctggtggcgcatggactgatcgacgtcgacgtggcgggccatggc
ggcctgtcgatctccgccaagggccgcgagttcctgcgcgagaagccgccgttgagcctg
cgcgtggtgaagaaggccaaaccgaaaggaaagtccgcgcgccgggaggccaaggaggcg
ctaccggctgcggaccgcatcctgttcgacaagttgcgcgcccggcggctggaactggcc
aaagccgggaacgtgccgccctacgtcatctttcacgacaagacgctgatggagatggcc
gcacgcacgccacggtccgcagccgagcttgccggcatctccggcgtcggcgaagccaag
ctcgcgcggtacggggaagccttcctctcggtcatcaaagagcacggatga
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