Rhodoplanes sp. Z2-YC6860: RHPLAN_33840
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Entry
RHPLAN_33840 CDS
T04290
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rhz
Rhodoplanes sp. Z2-YC6860
Pathway
rhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHPLAN_33840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhz03019
]
RHPLAN_33840
Enzymes [BR:
rhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHPLAN_33840
Messenger RNA biogenesis [BR:
rhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHPLAN_33840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
AMN41818
UniProt:
A0A127EX45
LinkDB
All DBs
Position
complement(3952545..3954017)
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AA seq
490 aa
AA seq
DB search
MTSFNEFGLAEPILRSLIEEGYVTPTPIQAQTIPLLLAKRDVIGIAQTGTGKTAAFALPI
IHHLAANRVRPQPKTCRVLVLSPTRELSGQILDSFRTYGRHLRLHTSLAIGGVNMGPQVR
QLAHGTDVLVATPGRLLDLAKSRAIILDKVEFFVLDEADRMLDMGFIHDIRKIVAKLPKE
RQTLLFSATMPSDIAELARHMLKDPAKVAVTPAATTVERIAQRIIHLDRGAKQKTLSDLL
RAEPIDRVLVFTRTKHGADKVVRGLEKDGIASDAIHGNKSQNQRTRALKDFRDGRIRTLV
ATDIAARGIDVEGVSHVINFDLPNVPESYVHRIGRTARAGADGVAISLCSHDELPYLRDI
EKLIRMAIPATGSTAQGKPAQQQRPQQHQGRNGNNGGHRSQNGHRQGHGQQAQGEGQNRN
RRNGQKHHGNKPHGANPNGHRPNNGQKPHQGQNRPQHNGGSGNPGATPRPIAPTQPIGSD
FQNVAFMQTR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcttttaacgaattcggcctcgcagagccgatcctccgctcccttatcgaagaa
ggctacgtcacccccactccgatccaggcgcagaccatcccgctgctgctcgccaagcgc
gacgtcatcggcatcgcgcagaccggcaccggcaagaccgcagccttcgcgctcccgatc
atccatcacctcgccgccaaccgcgtccgtccgcagccgaagacctgccgcgtgctggtc
ttgagcccgacgcgcgagctttcgggccagatcctcgacagcttccgcacctacggccgg
catctgcggctgcacacctcgctcgccatcggcggcgtcaacatggggccgcaggtccgc
cagctggcgcacggcaccgacgtgctggtcgccacgcccggccgcctgctcgatctcgcg
aagagccgcgcgatcatcctcgacaaggtcgagttcttcgttctcgacgaagccgaccgc
atgctcgacatgggcttcatccacgacatccggaagattgtcgccaagcttcccaaggag
cggcagacgctgctgttctccgccaccatgccgtcggacatcgccgagctcgcccggcac
atgctgaaagacccggccaaagtcgcagtcacgccggccgccaccacggtcgagcgcatc
gcgcaacgcatcatccatctcgaccgcggcgccaagcagaagacattgagcgatcttctg
cgcgcggagccgatcgaccgcgtgctggtgttcacccgcaccaaacacggcgccgacaag
gtggtccgtgggctcgaaaaggacggcatcgcatccgatgcgattcacggcaacaagtcg
cagaaccagcggacgcgcgcgctcaaggacttccgcgacggccgcatccgcacgctggtg
gcgaccgacatcgcggcccgcggcatcgacgtcgaaggcgtgagccacgtcatcaacttc
gacctgccgaacgtgccggagagctacgtccaccgcatcggccgcaccgcgcgcgccggc
gccgatggcgtcgcgatctcgctctgctcgcatgacgaactgccctacctgcgcgacatc
gagaagctgatccgcatggcgatccccgcgaccggcagcaccgcgcaaggcaagcccgcc
caacagcagcggccgcagcagcaccagggccgcaacggcaacaatggcgggcatcgttcg
cagaacgggcatcgccaaggccacggccagcaggcccagggcgagggtcagaaccgcaac
cgccgcaacgggcagaagcatcacggcaacaagccgcatggcgccaaccccaatggccac
cggccgaacaacggccagaagccgcatcaaggccagaaccgcccgcagcacaatggcggg
tccggcaaccccggcgcgacgccacgtcctatcgcgccaacgcagcccattggcagcgat
tttcaaaatgtggcattcatgcagacgcgctga
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