Rugositalea oryzae: RHPLAN_38910
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Entry
RHPLAN_38910 CDS
T04290
Name
(GenBank) metallo-beta-lactamase family hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhz
Rugositalea oryzae
Pathway
rhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHPLAN_38910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhz03019
]
RHPLAN_38910
Messenger RNA biogenesis [BR:
rhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHPLAN_38910
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AMN42323
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Position
4519856..4521526
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AA seq
556 aa
AA seq
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MAGPQGELVFAPLGGVGEIGMNLSIYGLGDARKRTWLIVDVGVSFAQEENLPGVDLVLPD
IRYLIEERKNIAGIVLTHAHEDHFGALMDLWPKLKVPIYATPFTASLFEAKLAGETMAPE
IPVKEIALGSRFNIGPFDIELCSVAHSIPESNALIIRTPFGNVLHTGDWKIDPTPVVGPP
TDEAKLRALGDEGCLVLIGDSTNAVRDGRSPSETAVAAELAKLIESSRQRVAVTTFASNV
GRIRAVADAARRAEREVVVVGRAMDRVIGVARETGYLEGVQPFRGMDVYGHLPPDKVVAL
CTGSQGESRAALARIAADEHPEVALSRGDRVIFSSRPIPGNEKAIGRVINGLIDQGVEVI
TDRTHLVHVSGHPRRAELEEMIGWVKPQTVIPVHGESLHLAEHEGLARKLGANTLQCRNG
DLVRLAPGRPEIIDEVPAGRFYKDGALVIPAETRTVAERKRMAFSGMVMVSLAIDDKGQL
VADPELELLGVPETTADGSQMFQVAADAVLETFDSLPRPRRRDPDSVAEAIRRSVRAAIS
SHWRKKPNVTVHVLTV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggccggtccgcagggcgagcttgtgttcgcgccactcggcggcgtcggcgagatcggc
atgaatctgtcgatctatggactcggcgatgcgcgcaaacgcacctggctgatcgtcgat
gtcggcgtgtcgtttgcccaggaggaaaaccttccgggcgtcgacctggtgctgcccgac
atccgctatctcatcgaggagcgcaaaaacatcgccggcatcgtgctgacgcacgcgcat
gaggaccatttcggcgcattgatggacctctggccgaagctcaaggtgccgatctacgcg
acgccgttcaccgcgtcgctgttcgaggccaagcttgccggcgagaccatggcgccggaa
atcccggtgaaggagatcgcgctcggctcgcgcttcaacatcgggccattcgacatcgag
ctctgctcggtcgcccattcgatcccggaatccaatgcgctgatcatccgcacgccgttc
ggcaacgtgctgcacaccggcgattggaagatcgatccgacgcccgtggtcggccctccg
accgacgaggccaagctccgcgcgctcggcgacgaaggctgtctcgtgctgatcggcgat
tccaccaacgcggttcgagacggccgctcgccgtccgaaacggccgttgcggccgagctt
gccaagctgatcgagagctcgcggcagcgcgtcgccgtcaccaccttcgcctccaatgtg
gggcgcatccgcgccgtggccgatgccgcgcgccgggccgagcgcgaggtcgtggtggtt
ggccgcgccatggatcgcgtgatcggcgtggcgcgcgagaccggctacctcgaaggcgtg
cagccgttccgcggcatggacgtctacggccatctgccgcccgacaaggtggtggcgctg
tgcaccggcagccagggcgagtctcgtgccgcactggcccgcatcgctgccgatgagcat
cccgaggtggcgctgtcgcggggcgaccgtgtgatcttctcgtcgcggcccattcccggc
aacgagaaggccatcggccgcgtcatcaacggcttgatcgaccagggcgtcgaggtcatc
accgaccggacgcatctggttcatgtctctggccatccgcgccgcgccgaactcgaggag
atgatcggctgggtcaagccgcagaccgtgatcccggtgcacggcgagtcactgcatctc
gccgagcatgagggtctggcgcgaaagcttggcgccaacacgcttcagtgccgcaacggg
gatctggtgcgcctcgcgccggggcggcccgagatcatcgacgaagtgccggccggccgg
ttctacaaggatggcgcgctggtgatcccggccgagacccgcacggtggccgagcgcaaa
cgcatggcgttttctggcatggtcatggtgtcgctcgccatcgacgacaaaggccagctc
gtcgccgatcccgagttggagctgctcggcgtgccggaaaccaccgccgacggctctcag
atgtttcaggtcgccgccgacgccgtgctggagaccttcgacagtctgccgcggccgcgc
cgtcgcgatccggactctgtcgccgaggcgatccggcggagcgtgcgggccgcgatcagc
tcgcactggcgcaagaaaccaaacgtcacggtgcacgtcctgacggtttga
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