Rugositalea oryzae: RHPLAN_40220
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Entry
RHPLAN_40220 CDS
T04290
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rhz
Rugositalea oryzae
Pathway
rhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHPLAN_40220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhz03019
]
RHPLAN_40220
03016 Transfer RNA biogenesis [BR:
rhz03016
]
RHPLAN_40220
Enzymes [BR:
rhz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RHPLAN_40220
Messenger RNA biogenesis [BR:
rhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHPLAN_40220
Transfer RNA biogenesis [BR:
rhz03016
]
Prokaryotic type
tRNA degradation factors
RHPLAN_40220
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AMN42454
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All DBs
Position
4669891..4672179
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AA seq
762 aa
AA seq
DB search
MVRNPPKHIPFPSKDQVLAFINEHHGKAGIREIARAFNLKNDRRAELKRLLRELEDGGRV
EARRKKLHKAGTLPDVTLADITGRDRDGELLATPTEWDVDEHGPVPKIRIVTPRKARPHE
VAGVGDRALLRVHEARQEDGSRDVAYNGRVIKIIDKAKTRALGIFRALPGGGGRLVPVDK
KQLGKELSIPSGATKDAQDGDLIAVSVQVQRFGLPVARVEERLGSLKTERAVSIIAIHAH
DIPHVFPVAVEAEAHAAKPATLEGREDWRKLALVTIDPVDAKDHDDAVHAGPDPDPDNPG
GHILTVAIADVAHYVRPGSALDREAVKRGNSVYFPDRVVPMLPERISNDLCSLRPREDRA
ALAVRMIIGPDGRKRSHTFHRVLMRSAAKLNYEQAQMAIGGRTDDDTGPLLENVLKPLYA
AYEALKRARDARGPLDLDLPERKILLKADGTVDRVVVPERLESHRLIEEFMILANVAAAE
TLEKARVPLIYRAHDEPSLEKTEALRKFLETLHISLPKGGVLRSEQFNRILGQTKGQDVD
ALVNEVVLRSQAQAEYSADNIGHFGLNLRRYAHFTSPIRRYADLVVHRGLIRAGRFGSDD
LPESQDHAALAEVAAQISASERRAMKAERETKDRLIAHFLSDKIGATFEGRISGVTRAGI
FIKLDHTGADGFVPARTIGNEYFRYEEDMHAMVGNSTGETYRLGDRVTVKLVEAAPVAGA
LRFELLSEGKIVGRAQQRPSQRRSAKSRPERGPKKRYGPRRK
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
ttggtacgaaatccacccaaacacatccccttccccagcaaggaccaggtccttgccttc
atcaacgaacatcacggcaaggccggcatccgggagatcgcccgggccttcaacctcaag
aatgaccgccgcgccgagttgaagcgcctgctgcgcgagctcgaagacggcggccgggtc
gaagcccgcagaaagaagctgcacaaggcgggcacgctgcccgacgtgacgctcgccgac
atcaccggccgtgaccgcgacggcgaactgctcgccacccccaccgaatgggacgtggac
gagcacggtccggtcccgaagatccgcatcgtcacgccgcggaaggcgcggcctcatgag
gtcgccggcgtcggcgaccgggcactgcttcgtgtccatgaagcgcgccaagaagacggc
agccgggacgtcgcctacaacggccgcgtcatcaagatcatcgacaaggccaagacccgc
gcgcttggcatcttccgtgcgctgccgggcggcggcggccggctcgtgccggtcgacaaa
aagcagcttggcaaggagctgtcgatcccgagcggcgcgacgaaagacgcccaggacggc
gacctgatcgcggtgagcgtccaggtgcagcgcttcggcctgcccgtggcgcgcgtcgag
gagcggctcggctcgctcaagaccgagcgcgccgtaagcatcatcgcgatccacgcccac
gacatcccccacgtgtttccggtcgcggtcgaagccgaggcccatgcggcaaaacccgca
acgcttgaaggccgtgaggattggcggaagctcgcgctcgtcaccatcgatccggtcgat
gcgaaagatcacgacgatgcggtccacgccgggccagatcccgacccggacaatccgggc
gggcatatcctcacggtcgcgatcgccgacgtcgcgcactacgtgcggccgggctcggcg
cttgatcgcgaagcggtcaaacgcggcaactcggtctatttcccggaccgcgtggtgccg
atgctgccggagcgcatttccaacgatctctgctcgctgcgcccgcgcgaagatcgcgcc
gcgcttgcggtgcggatgatcatcggccccgacggccgcaagcgctcgcacacgttccat
cgggtgctgatgcgctcggccgccaagctcaattacgagcaggcgcagatggcgatcggc
ggccgtaccgacgacgacaccggaccgcttctcgagaacgtgctgaagccgctgtacgcc
gcttacgaagcgttgaaacgcgcgagagacgcccgcggtccgctcgacctcgacctgccc
gaacggaaaatcctgctcaaggccgacggcaccgtcgaccgtgtcgtcgtgcccgagcgg
ctggagtcgcaccggctgatcgaggagttcatgatcctcgccaacgtcgcggcggccgag
acgctggaaaaggcgcgcgtaccgctgatctaccgggcgcacgacgagccctcgctggag
aaaaccgaagcgctgcgcaaattcctcgagacgctacacatctcgctgcccaagggcggc
gtgcttcgctccgagcagttcaaccgcatcctcggccaaaccaagggccaggacgtcgac
gcgctggttaacgaggtggtgctgcgctcacaggcccaggccgaatattccgccgataac
atcggccatttcggcctgaaccttcgccgctacgcgcacttcacctcgccgatccggcgc
tatgccgaccttgtggtgcatcgtgggctgatccgggcgggacgcttcggctcggacgat
ctccccgagagccaggatcacgcggcgctggccgaagtggcggcgcagatttccgcctcc
gagcggcgcgccatgaaggccgagcgcgagaccaaagaccggctgatcgcacatttcctc
tccgacaagatcggcgccacgttcgaaggccgcatctcgggcgtcacccgcgccggtatc
ttcatcaagctcgaccacactggcgccgacggcttcgtaccggctcgcaccatcggcaac
gagtacttccgctacgaggaagacatgcacgccatggtcggcaactcgacgggcgaaacc
taccggctcggtgatcgcgtcacggtgaagctcgtcgaggctgcgccggtcgcgggcgcg
ctgcgtttcgagctcctgtcggaaggcaagattgtcgggcgcgcgcaacagcggccgtcg
cagcgccgctccgcaaaatcgcggcctgaacgcggccccaaaaagcgctatggtccgcgt
cgcaaatga
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