Rhodoplanes sp. Z2-YC6860: RHPLAN_41500
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Entry
RHPLAN_41500 CDS
T04290
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rhz
Rhodoplanes sp. Z2-YC6860
Pathway
rhz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHPLAN_41500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhz03021
]
RHPLAN_41500
03400 DNA repair and recombination proteins [BR:
rhz03400
]
RHPLAN_41500
Enzymes [BR:
rhz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHPLAN_41500
Transcription machinery [BR:
rhz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHPLAN_41500
DNA repair and recombination proteins [BR:
rhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHPLAN_41500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
IDH
DUF4249
Motif
Other DBs
NCBI-ProteinID:
AMN42581
UniProt:
A0A127EYX6
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Position
complement(4806719..4807846)
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AA seq
375 aa
AA seq
DB search
MSDTYVRPADGQAAADNSHGAEWGAQKSAPLNTMGVNVIQKNWQELIKPNKLQVSAGSDA
KKTATVIAEPLERGFGVTLGNALRRILLSSLQGAAVQSVHIDGVLHEFSSIAGVREDVTD
IVLNIKDIAIKMQGDGPKRMVVKKSGPGTVTAGDIQTVGDIVVLNPELVLCTLDEGAEIR
MEFTVNTGKGYVPAERNRPEDAPIGLIPVDSLFSPVRKVSYKVENTREGQILDYDKLTMT
IETNGAVGPEDALAYAARILQDQLNVFVNFEEPRKEQAQESIPDLAFNPAFLKKVDELEL
SVRSANCLKNDNIVYIGDLVQKTEAEMLRTPNFGRKSLNEIKEVLAQMGLHLGMEVPGWP
PENIEELAKRFEDHY
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacttatgtccggcctgcggacgggcaggctgccgccgacaattcccacggg
gcggagtggggtgcgcaaaagagcgcgccactcaatacgatgggtgtgaacgtgatccag
aagaactggcaggaactgatcaagccgaacaagctccaggtttcggcgggctccgacgcg
aagaagaccgcgacggttatcgccgagccgctcgagcgcggtttcggcgtgacgctcggc
aacgcgttgcggcgcattctgctctcgtcgctgcagggcgcggctgtgcagtcggtgcac
atcgacggcgtgttgcacgagttctcgtcgatcgctggcgtccgcgaggacgtcactgac
atcgtgctcaacatcaaggacatcgccatcaagatgcagggcgatggccccaagcgcatg
gtggtcaagaagtccggcccgggcaccgtgacggctggcgacatccagacggtcggtgac
atcgtcgtcctcaaccccgagctcgtgctctgcaccctcgacgagggcgccgagatccgc
atggagttcacggtcaacaccggcaagggctatgtgcccgccgagcgtaaccgtcccgag
gacgcgccgatcgggctcattccggtcgacagcctgttctcgccggtccgcaaggtctcc
tacaaggtcgagaacacccgtgagggccagatactcgactacgacaagctgaccatgacg
atcgaaaccaacggcgcggtcggccccgaggatgcgctcgcttacgcggcgcgcatcctg
caggaccagctcaacgtgttcgtcaacttcgaggagccccgcaaggagcaggcccaggaa
tccattccggacctcgccttcaacccggcgttcctcaagaaggtcgacgagctcgagctc
agcgttcgttcggcgaactgtctcaagaacgacaacatcgtctacatcggcgacctcgtt
cagaagaccgaagccgagatgctgcgcacgccgaatttcggccgcaagtcgctcaacgag
atcaaggaagtgctggcacagatgggcctgcaccttggcatggaagtgcctggctggccg
cccgagaacatcgaagagctcgccaagcgcttcgaggatcattactaa
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