Rugositalea oryzae: RHPLAN_41800
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Entry
RHPLAN_41800 CDS
T04290
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhz
Rugositalea oryzae
Pathway
rhz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHPLAN_41800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhz03021
]
RHPLAN_41800
03400 DNA repair and recombination proteins [BR:
rhz03400
]
RHPLAN_41800
Enzymes [BR:
rhz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHPLAN_41800
Transcription machinery [BR:
rhz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHPLAN_41800
DNA repair and recombination proteins [BR:
rhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHPLAN_41800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
PE-PGRS_C
Motif
Other DBs
NCBI-ProteinID:
AMN42611
LinkDB
All DBs
Position
complement(4826193..4830479)
Genome browser
AA seq
1428 aa
AA seq
DB search
MNQEIMNLFSPQVPAQVFDQIKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTPLQDRQLLSEDEYLKAQDEYGGDSFTA
LIGAEAIREMLKGLDLEKLAADLRVEIAESKSELKPKKLAKRLKLIEAFTQSGNKPEWMI
LTQVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGSPIIVPSQDIVLGLYYLTIMADGHPGEWKYEIHSEEELKKDP
KKVNTVRGFYRDIAEVEHALNQGGVHLHSKIKFRWVGIDEKGGEYNKWYETTPGRALLGQ
VLPRSSKVPFDVVNKLMTKREISGMIDTVYRHCGQKDTVIFCDRIMALGFYHAFRAGISF
GKDDMVVPKKKWDIVEKTRTEAKDFEQQYNDGLITQGEKYNKVVDAWSKATDEIAGKMME
EISAAKRDEKTGRQAQVNSIYMMAHSGARGSPAQMRQLAGMRGLMAKPDGSIIETPIISN
FKEGLSVMEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIITSFDCGTKDGIAV
RAIIDSGTVVASLASRILGRTTAEDVKDPAGTRVIVKRNTLLSEKEVEEIVQANVQELRI
RSVLTCELINGVCGACYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQ
ISEQSFIESNFDGKIVIKTKGKNAVVKNSDGDWIAMGRSIVIAVADPDGTERATHRIQNG
ARLRVTDGQEIKRGTRIAEWDPYTRPILTEVDGTVGFEDLVEGQSMSESVDESTGIAKRV
VIDWRTSTRAADLRPAIVIKGADGKVQKLARGGDARYMLAVDAILSADVNEHMKAGDVIA
RIPTESAKTRDITGGLPRVAELFEARRPKEAAVIAEMTGTVQFGRDYKNKRRLSITPTEG
GGEPVEYLIPKGKHIHLQDGDLIEKGDYIVDGNPAPHDILAIKGVEELANYLVNEIQDVY
RLQGVAINDKHIEVIVRQMLQKVEITDVGETDMIHAEQIDKIEFDEINARFVAEGKKPAT
AHPVLLGITKASLQTRSFISAASFQETTRVLTEAAVNGKADTLDGLKENVIVGRLIPAGT
GAMMSKLREVATKRDQLILDEREKDAAKAAPVTPAAPAEEPVALPAAE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaatcatgaatcttttcagcccgcaggttcctgcgcaggtgttcgaccag
atcaagatttcgatcgcgagcccggaaaagattctgtcctggtcctacggcgagatcaaa
aagccggagaccatcaactaccgtaccttcaagcccgagcgcgacggcttgttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgacgctcagccgcgtgcggcgc
gagcgtatgggccatatcgagctcgcggcgcctgttgcgcacatctggttcctgaagtcg
ctgccgtcgcgcatcggccttctgctcgacatgacgctgaaggatctcgagcgcattctg
tacttcgagtactacgtggtgctggagccgggtctgaccccgctgcaggaccgtcagctc
ctgtcggaggacgagtacctcaaggcgcaggacgagtacggcggggacagcttcacggca
ctgatcggggcggaagccatccgcgagatgctgaagggcctcgacctcgagaagctcgcc
gcggatctgcgcgtcgagatcgcggagtcgaagtccgagctcaagccgaagaagcttgcc
aagcggttgaagctgatcgaggccttcacccagtccggcaacaagccggagtggatgatc
ctcacgcaagtgccggtgatcccgccggatctgcgacctctcgttccgttggatggcggc
cgcttcgccacgtccgacctcaacgatctctatcgccgcgtcatcaaccgcaacaaccgc
ttgaagcggctgatcgagctgcgtgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaggcggtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcaccggc
gccaacaagcgtccgttgaagtcgctcgccgacatgctcaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgctcggtgatcgtggtcggt
ccggagctcaagctgcatcagtgcggtctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggcttgacgccaagggtctgtcgaccacggtgaagcaggcgaag
aagctcgtggagaaggagaagccggaggtttgggacattctcgacgaggtgatccgcgaa
catccggtcatgctcaaccgcgcgccgaccttgcaccgtctcggcattcaggcgttcgag
ccggtcctcattgagggaaaggctatccagctgcatccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaggcacagctc
gaagctcgcgtgctgatgatgagcacgaacaacatcctgcatcccgcgaacggctcgccg
atcattgtgccgtcgcaggacatcgtgctgggcctctactacctcaccattatggccgac
ggtcatccgggcgagtggaagtacgagatccattcggaggaggagctgaagaaggacccg
aagaaggtcaacacggtgcgcggcttctaccgcgacatcgccgaggtcgagcacgcgctc
aaccagggcggcgtgcatctgcacagcaagatcaagttccgctgggtcggcatcgacgag
aagggcggggagtacaacaagtggtacgagaccacgcccggccgtgcgctgctcggtcag
gtgttgccgcgctcctcgaaggttccgttcgacgtcgtgaacaagctcatgacgaagcgc
gaaatctccggaatgatcgacaccgtctatcgccactgcggtcagaaggacacggtgatc
ttctgcgatcgcatcatggcgctcggcttctatcacgcgttccgcgccggcatttcgttc
ggcaaggacgacatggtcgtgccgaagaagaagtgggacatcgtcgagaagacccgcacg
gaggccaaggacttcgagcagcagtacaacgacggcctgatcactcagggcgagaagtac
aacaaggttgtcgatgcctggtcgaaggcgaccgacgagatcgccggcaagatgatggag
gaaatctcggcggcaaagcgcgacgagaagaccggccgtcaggctcaggtcaactccatc
tacatgatggcgcactccggcgcgcgcggttcacccgcgcagatgcgtcagctcgccggc
atgcgcggcctgatggccaagcctgacggttcgatcatcgagaccccgatcatctcgaac
ttcaaggaaggcctgtccgtgatggagtacttcaactccacgcacggcgcccgcaaagga
ctggccgacaccgcgctgaagactgcgaactcgggttacctgacccggcgtctcgtcgac
gtcgcgcaggactgcatcatcacgtcgttcgattgcggcaccaaggacggcattgcggtc
cgagccatcatcgactccggcacggtggtggcgtcgctggcgagtcgcatcctgggccgt
accacggctgaggatgtgaaggatccggcgggcactcgcgtcatcgtcaagcggaacacg
ctgctgagcgaaaaggaagtcgaggagatcgtccaggccaacgtgcaggagctgcgcatc
cgttcggtgctgacctgcgagttgatcaatggcgtttgcggagcctgctacgggcgcgat
cttgcccgcggcacaccggtgaacatgggcgaggcggtcggcgtgatcgcagcgcagtcg
atcggtgagccgggcacccagctgaccatgcgcacgttccatatcggcggcgcggcgcag
atctccgagcagtcgttcatcgagtcgaacttcgacggcaagatcgtcatcaagaccaag
ggcaagaatgccgtcgtcaagaactcggacggcgactggattgccatgggccgcagcatc
gtgatcgctgtggcagaccccgacggcaccgaacgcgccacgcaccgcatccagaacggc
gcgcggctgcgcgtcacggacggtcaggagatcaagcgcggcacgcgtatcgccgagtgg
gatccctacacccggccgatcctcaccgaggtcgacggcaccgtcggcttcgaggatctg
gtggaagggcagtcgatgtcggaatcggtcgacgagtcgaccggtatcgccaagcgtgtg
gtcatcgattggcggacctcgacacgggcggcggaccttcgtccggcgatcgtgatcaag
ggcgcggacggcaaggtgcagaagctcgcgcgcggcggcgatgcccgctacatgctcgcg
gtcgatgcgattttgtcggccgacgtcaacgagcacatgaaggccggcgacgtcatcgcc
cgtatcccgaccgagagcgccaagacccgcgacatcaccggcggtctgccgcgggtggcg
gagttgttcgaggcgcgtcggccgaaggaggccgccgtcattgccgagatgaccggcacc
gtgcagttcggccgcgactacaagaacaagcggcgcctgagcatcacgccgaccgagggt
ggcggcgagcccgtggagtatctgatccccaagggcaagcacatccacctgcaggacggc
gatctgatcgagaagggcgactatatcgtcgacggcaatcctgcgccgcatgacatcctg
gcgattaagggtgtcgaggagctggcgaactacctggtcaacgaaatccaggacgtctac
cggctgcagggcgtggcgatcaacgacaagcacatcgaggtgatcgttcgccagatgctg
cagaaggtcgagatcaccgacgttggcgagaccgacatgatccacgccgagcagatcgac
aagatcgagttcgacgagatcaacgccaggttcgtggccgagggcaagaagcccgcgacg
gcgcacccggtgctgctcggcatcaccaaggcctcgctgcagacccgctcgttcatctcg
gcagcgtcgttccaggagaccacccgcgtgctcaccgaagccgccgttaacggcaaggcg
gatacgctcgacggtctcaaggagaacgtcatcgtcggacgcctgattccagccggaacc
ggcgccatgatgagcaagctgcgcgaggttgcgaccaagcgcgatcagctcatcctcgac
gaacgggagaaggacgcagcgaaggctgcacccgtgaccccggcggcgcccgccgaggag
cctgtcgcactgcctgcggccgagtga
DBGET
integrated database retrieval system
