Rugositalea oryzae: RHPLAN_43640
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Entry
RHPLAN_43640 CDS
T04290
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhz
Rugositalea oryzae
Pathway
rhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHPLAN_43640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhz03019
]
RHPLAN_43640
03009 Ribosome biogenesis [BR:
rhz03009
]
RHPLAN_43640
Enzymes [BR:
rhz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RHPLAN_43640
Messenger RNA biogenesis [BR:
rhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHPLAN_43640
Ribosome biogenesis [BR:
rhz03009
]
Prokaryotic type
rRNA processing factors
RHPLAN_43640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMN42793
LinkDB
All DBs
Position
5033137..5036403
Genome browser
AA seq
1088 aa
AA seq
DB search
MANKMLIDATHPEETRVVVLRGNRVEEFDFETAHRRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLEDEARAARESDEDEGGNGHRGGRRRRSRHR
SHNRNDATIHSEPVNGETHAAEDHAVHETGEVSGDEHTEVEHHHADDHAEDAPYETGADT
FHAASSEEPAGEAANPPVPAEIGTPVEHPQPEFAAEAQIDPPAEAPGHDAAAHHDEIEHH
PHAEGGESFGAHASEANEHDGNGHDENGHDAHAGNGHGPEEHGNEEHGSDEHGSEEEEEV
VESVGGQDAIEEVMERAPRYRRQYKIQEVIKRRQVMLVQVVKEERGTKGAALTTYLSLAG
RYCVLMPNTARGGGISRKITSAEDRRKLREIAEELEVPEGMGVILRTAGAARTKAEVKRD
FEYLLRLWEQVRDLTLKSTAPNLVYEEGSLAKRSIRDLYSKDIDEIVVAGEQGYRDAKEF
MRMLMPSHAKNVKLYQDSQPVYTRYGIESQLDAMFSPTVQLRSGGYIVINQTEALVAIDV
NSGRSTREHHIEDTALKTNCEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRTVERRLK
DALRNDRARIQVGRISHFGLMEMSRQRIRTSVLESSTEKCPHCGGTGHVRSVSSVALQLL
RSIEETLLKGPTHNLIVRTRPEIALYVLNHKRAHLRALEERFRIAITVNSDEEVAGQVGF
AVDRGEQVMSIDQAKAVLAEQAQSSGPILLEEEEPDFVEEHDEEAEADQETEGEEREHFE
VSEHEPQDGEDAQPMHGDGGREGSEGPREGSGRSRRRRRRRGRGGRGSEGREGGDGYQQP
HHGQGHDEGHDQFGGQQPGEFGAEQNGGYQPSSFAASDDGEPMLEGSTVQEHFGEGHAEG
DAPHANGDGEHKKRRRGRRGGRRNRRGRDGQEGQDGYQGSSHEMSQGGHEGQQGGYEGQQ
SHGEYAPPAQGGQPDMQYESHSRPDMDERPQWSPPPETSAPHVEAHAAAAPAPQPAPEPA
APARRRSTVREAAPVSGVSAPTMTTAPEPQPAPPPAPAVASESAPAEEASKPRRTGWWAK
RLLGGDKG
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgcttatcgacgcgacccatccggaagagacccgggtggtcgtgctg
cgcggcaatcgcgtcgaggagttcgatttcgaaaccgcgcatcgccgccagcttcgcggc
aacatctatctagccaaagtcacccgcgtcgaaccgtcgctgcaggcggcattcgtcgag
tatggcggcaaccgccacggctttctggcgttctcggaaatccatccggattattaccag
atcccggtggccgaccggcaggcgctgctcgaggacgaagcgcgcgccgcacgcgagagc
gacgaggatgaaggcggcaacggccatcgcggcggccgccgccgtcggagccgccatcgc
agccacaaccgcaacgatgcgacgatccacagcgagccggtgaacggcgaaacccacgct
gctgaagatcatgcggtccacgagaccggagaggtttcgggcgacgagcacaccgaggtc
gagcatcaccacgccgacgaccatgccgaggacgctccgtacgagacgggagcggacacc
tttcatgcggcaagctccgaggagcctgccggagaagccgccaatccgccggtgccggcc
gagatcggaacgccggtcgagcatccgcagccggaattcgcagccgaggcgcagatcgat
ccgcccgcggaagctccgggccacgacgcggccgcgcatcacgacgagatcgaacaccat
ccacacgccgaaggcggcgaatcattcggggctcacgcatcggaagcgaacgagcacgac
ggcaacggccatgacgagaacggccatgacgcgcatgcgggcaacggccatggccctgaa
gagcatggcaacgaagagcacggttccgacgagcacggctccgaagaagaggaagaggtc
gtcgaatcggtcggtggccaggacgccatcgaagaggtgatggagcgtgccccgcgctat
cggcggcaatacaagatccaagaggtcatcaagcgccggcaagtgatgctggtgcaggtg
gtcaaggaagagcgcggcaccaagggcgcggcgctgaccacgtatctgtcgctcgccggc
cgctattgcgtgctgatgcccaacaccgcgcgcggcggcggcatcagccgcaagatcacc
agcgccgaggaccgccggaagctccgcgagatcgccgaagagctcgaggttccggagggc
atgggcgtgatcctgcgcaccgcgggcgcggcgcgcaccaaggccgaggtgaagcgcgac
ttcgaatatctgctgcggctctgggagcaggtccgcgatctgacactgaagtcgaccgca
ccgaacctggtctacgaggaaggctcgctcgccaagcgctcgatccgcgacctctactcc
aaggacatcgacgagatcgttgtggccggcgaacagggctaccgcgacgccaaggaattc
atgcgcatgctcatgccgagccatgcgaagaacgtgaagctctaccaggactcgcagccg
gtctatacgcgctacggcatcgagagccagctcgatgcgatgttctcgccgaccgtgcag
ctgcgctccggcggttacatcgtcatcaaccagaccgaggccctcgtcgcgatcgacgtc
aactccggacgctcgacccgcgaacaccacatcgaggacaccgcgctcaagaccaactgc
gaggcggcggaagaagtcgcacgccagctccgcctgcgcgaccttgccggtctcatcgtg
atcgacttcatcgacatggacgagaagcgcaacaaccgcaccgtcgagcggcggttgaag
gacgcgctgcgcaacgaccgtgcccgcattcaggtcggccgcatctcgcatttcggcctg
atggaaatgtcgcgccagcgcatccgcacctcggtgctggaaagctcgaccgagaagtgc
ccgcattgcggcggcaccggccatgtgcgctcggtctcgtcggtcgcgctgcagctcctg
cgctcgatcgaggagacgctgctcaaaggcccgacacacaatctcatcgtgcgcacccgt
cccgagatcgcgctctatgtgctcaaccacaagcgcgcgcatctgcgtgctctcgaagag
cgcttccgcatcgccatcaccgtcaactccgacgaagaggtcgccggccaggtcggcttt
gctgtcgaccgcggcgagcaggtgatgtcgatcgatcaggccaaggccgtgctcgccgaa
caggcgcagtcctcaggcccgatcctgctcgaggaagaggagccggacttcgtcgaagag
cacgatgaagaggccgaagccgatcaggagaccgaaggcgaggagcgcgagcacttcgag
gtgtccgagcacgagccacaggacggcgaagacgcccagcccatgcatggcgacggcgga
cgcgaaggctccgagggaccgcgcgaaggcagcggccgctcacgccgccgccggcggcgg
cgcggccgaggtggccgtggcagtgaaggccgcgaaggcggtgacgggtatcaacagccg
catcacggccaaggccacgacgaaggccacgaccagttcggtggacagcagccgggcgaa
ttcggcgccgagcagaacggcggctatcagccgtcgagctttgctgcgtccgacgacggc
gagccgatgctggaaggctccacggttcaggagcacttcggcgaaggccatgccgagggc
gatgctccgcatgccaatggcgacggcgaacacaagaagcgccggcgaggccgccgcggc
ggacgccgcaaccggcgcggccgcgacgggcaggaaggccaggacggctaccagggcagc
tctcacgagatgtctcagggcggccatgaagggcagcaaggcggctacgagggccagcag
agtcacggtgaatacgctccgcccgcccaaggcgggcagccggacatgcagtacgagagc
cactcgcgtccggacatggatgagcgtccgcaatggtcgccgccgcccgagacgtctgct
ccgcacgtcgaggcgcatgcggctgcggcgcctgctccgcagcctgcgcccgagcctgca
gctccagcgcgccgacgctcgacggtgcgcgaggccgcgcctgtgtccggtgtcagcgcg
ccaaccatgacgacggcgcccgaacctcagcccgcgccaccaccggcgcccgctgtcgca
tcggagtccgctccggccgaagaggcgagcaagccgcgccgcaccggctggtgggccaag
cgtctcctgggcggagacaaaggctga
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