Rugositalea oryzae: RHPLAN_57930
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Entry
RHPLAN_57930 CDS
T04290
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhz
Rugositalea oryzae
Pathway
rhz03420
Nucleotide excision repair
rhz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHPLAN_57930
03430 Mismatch repair
RHPLAN_57930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhz03400
]
RHPLAN_57930
Enzymes [BR:
rhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHPLAN_57930
DNA repair and recombination proteins [BR:
rhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHPLAN_57930
MMR (mismatch excision repair)
Other MMR factors
RHPLAN_57930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AMN44207
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All DBs
Position
6674027..6676738
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AA seq
903 aa
AA seq
DB search
MADPAKQPAFEPAPAPPAPGGIAARALAARPGATSYLDKMNPEQREAVETLDGPVLVLAG
AGTGKTRVLTTRITHILTTGRARPGDILAVTFTNKAAREMKERIGSLIGHAVEGMPWLGT
FHSIGVKILRRHAEMVGLKSDFTILDTDDSIRLLKQLLAAEGIDEKRWPARQLAGLIDHW
KNRGLTPDLVPAGEGAAFANGRGKKLYQAFQERLKVLNAADFGDLLLEMIRLFREHPDVL
AQYQRRFRYILVDEYQDTNVAQYLWLRLLSQKPVVATAVSTAVIPGRREAANPESSTNLE
PLDTTESMDSGFAPQCVEDARERADGTRPGMTSGESSAPQPAQKNICCVGDDDQSIYGWR
GAEVDNILRFEHDFPGAKVIRLERNYRSTGHILATASHLIAHNEGRLGKTLRTEDVAGEK
VTVTGNWDSEEEARAIGEEIEQLQRQGHILDEIAILVRASYQMRELEDRFVTLGLPYRVI
GGPRFYERAEIRDALAYLRVINSPSDDLAFERIVNTPKRGLGDATIQLLHDHARKRRIPL
TEAARAVIETDELKPKARGALRGVIDSFDRWRAQKETLPHNQLAEIVLDESGYTEMWQKD
RSADAAGRLENLKELVRSMEEFENLAGFLEHISLVMDTDRGEAEDKVSIMTLHSAKGLEF
DTVFLPGWEEGLFPSQRTLDEQGRAGLEEERRLAHVGVTRARKLCKIYFATNRRTHGMWQ
TNIPSRFLDELPEAHVTVTEARGSFSERAGYGGYGGGSRFDEMKSFGSSYGTPGWQRAQA
NKGRGGFSESGGPRYGQQGVGDDSLDHIDPIYDDDGAEVPATSRSPRRSPTGGGGPKRRT
PLTIEGELVAKSTGTTSAFGIGDRVFHQKFGNGNVVAIDGNKLTIAFDKAGEKRVVDSFV
ERV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
ttggctgatccggcaaaacaacccgcgttcgaacccgcgcctgcgccccccgcgccgggc
ggcattgccgcgcgcgcgctcgccgcgcggccgggcgcgacgagctacctcgacaagatg
aacccggagcagcgcgaagcggtcgagaccctcgacggcccggtgctggtgctggccggt
gcgggcaccggcaagacccgcgtgctgaccacgcgcatcacccacatcctcaccaccggc
cgggcgcggccgggcgacatcctcgccgtcaccttcaccaacaaggcggcgcgcgagatg
aaggagcgcatcggcagcctgatcggccatgcggtcgagggcatgccgtggctcggcacg
ttccactcgatcggcgtgaagatcctgcgccgccacgccgagatggtcggactgaagagc
gacttcaccatcctcgacaccgacgattcgatccggctgctgaaacagctcctcgccgcc
gaaggcatcgacgagaagcggtggccggcgcgccagctcgccggcctgatcgaccattgg
aagaaccgtggcctgacgccggacctggtgccggccggcgaaggcgcggccttcgccaac
ggccgcggcaagaagctctatcaggcgttccaggagcggctgaaggttctgaacgcggcc
gacttcggcgacctgctgctggagatgatccggctgttccgcgagcacccggacgtgctg
gcgcagtatcagcggcggttccggtacattttggtggacgagtatcaggacacgaacgtc
gcgcagtatctgtggctacggttgctgtcgcagaagcctgtggtggcgaccgccgtctcc
accgccgtcattccggggcgccgcgaagcggcgaacccggaatccagtaccaacctcgaa
cctctcgacaccaccgaatccatggattccgggttcgcgcctcaatgcgtcgaagacgcg
cgtgaacgcgctgatgggacgcgccccggaatgacaagtggcgagagctcggctccccaa
cctgcccagaaaaacatctgctgcgtcggcgacgacgaccagtcgatctacggctggcgc
ggcgccgaggtcgacaacatcctgcgcttcgaacacgacttccccggcgcgaaggtgatc
cggctggagcgcaattacagaagcaccggtcatattctcgcgacagcaagccacctcatc
gcccacaacgaaggccgcctcggcaagacgctccgcaccgaggacgtcgcgggtgaaaag
gtcaccgtcaccggaaactgggacagcgaggaagaggcccgcgcgatcggcgaggagatc
gaacagctccagcgccagggtcacatcctcgacgagatcgccattctggtccgcgcctcc
taccagatgcgcgagctggaagaccgtttcgtcacgctcggcctgccctatcgggtcatc
ggcgggccccgcttctacgagcgcgccgaaatccgcgacgcgctagcctatctgcgcgtc
atcaactcgccgtccgacgacctcgccttcgagcgcatcgtcaacacgccgaagcgcggc
ctgggcgacgccaccatccagctcctgcacgaccacgcccgcaagcgccgcattccgctc
accgaagccgcccgcgccgtgatcgaaaccgacgagctgaagcccaaggcccgcggcgcg
ctgcgcggcgtcatcgacagcttcgaccgctggcgcgcccagaaggaaacgctgccgcac
aaccagctcgccgagatcgtgctggatgagtccggctacaccgagatgtggcagaaggac
cgcagcgccgacgccgccggccgcctggagaacctgaaagagctggtccgctccatggag
gagttcgagaacctcgcgggcttcctcgagcacatctcgctggtgatggacaccgaccgc
ggcgaggccgaggacaaggtcagcatcatgacgctgcactcggccaaggggctcgagttc
gacaccgtgttcctgcccggctgggaggaaggcctgttcccgagccagcgcacgctcgac
gagcagggccgcgccggcctggaagaagaacgccgcctcgcccatgtcggcgtcacgcgc
gcgcgcaagctctgcaagatctacttcgccaccaaccgccgcacccacggcatgtggcag
accaacatcccgtcgcgcttcctcgacgagctgcccgaggcccacgtcacggtgaccgag
gcccgcggcagcttctcggagcgcgcgggctatggcggctacggcggcggctcacgcttc
gacgagatgaagtcgttcggctcgagctacggcacgccgggctggcagcgcgcgcaagcc
aacaagggccgcggcggcttctcggagagcggcgggccgcgctacggccagcaaggcgtc
ggcgacgactcgctcgaccacatcgacccgatctatgacgacgacggcgcggaggtgccc
gccacgtcgcgctcgccgcgccgaagcccaacgggcggcggcgggccgaagcggaggacg
ccgctcaccatcgaaggcgagctcgtcgccaaatccaccggcaccacctctgccttcggc
atcggcgaccgcgtgtttcaccagaagttcggcaacggcaacgtggtggcgatcgacggc
aacaagctgacgatcgcgttcgacaaggccggtgagaagcgcgtggtagatagttttgtg
gagagggtgtga
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