Rhodococcus sp. 2G: BO226_06025
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Entry
BO226_06025 CDS
T10983
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rhzg Rhodococcus sp. 2G
Pathway
rhzg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhzg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BO226_06025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhzg03019
]
BO226_06025
Messenger RNA biogenesis [BR:
rhzg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BO226_06025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
APE08834
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Position
1306462..1308267
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AA seq
601 aa
AA seq
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MSRPARGRGRATRNAGPPARVPRRVAQNSANPQRPDARIVDPTERLGLPPKAPRDGLRVV
ALGGIGEIGRNMTVFEHQGRLLVVDCGVLFPEDQQPGVDLILPDFRYIEDRMDDVEAIVL
THGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHRQRPNLVEVVEGQTTSHGPF
ECEYFAVNHSIPDAIAVAIRTAAGIVLHTGDIKLDQLPLDNRLTDLAGFSRLGDEGVDLF
LVDSTNAEVPGFVTPEREIGGVLDTVIGKAANRVIVASFASHVHRIQQIVDVAERYNRRV
AFVGRSMVRNMQIAQDLGYLNVPDGLEVDIDTAASLPDDRVVLVSTGSQGEPLSALSRMA
RGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGAKVVTQQNAKVHVSGHASAG
ELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVPRERIVLAEDGVVVDMVDGLADIV
GRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISISVAVDAATGRAVSTPEVSGRGFS
DDPDALDEAAQLVDKALNELAAEGVTETHRIAQGIRRVVGRWVAETYRRRPMIVPTVIPV
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccccgcacgcggccggggccgcgccacccgcaacgccggtccgcccgcccgc
gttccgcggcgtgtcgcgcagaactcggcgaacccccagcgtccggacgcccgcatcgtc
gatcccaccgagcgattgggtctgccgccgaaggctcctcgcgacggtctgcgggtcgtc
gcgctcggcggtatcggcgagatcggccgcaacatgacggtcttcgagcaccagggccgg
ctgctcgtcgtcgactgcggggtgctctttcccgaggaccagcagccgggcgtcgacctg
atcctgcccgacttccggtacatcgaggaccggatggacgacgtcgaggcgatcgtcctc
acccacggccacgaggaccacatcggtgccgtgccgttcctgctgcgcctgcgccccgac
atcccggtcgtcgggtccaagttcaccctggcgctcgtcgcggcgaagtgccgcgaacac
cgccagcgtcccaacctcgtcgaggtcgtcgaggggcagaccacctcgcacggtccgttc
gagtgcgagtacttcgcggtcaaccactccatcccggacgcgatcgccgtcgcgatccgc
accgctgcgggcatcgtgctgcacaccggcgacatcaagctcgaccagctgccgctcgac
aaccgtctcaccgacctcgcgggcttctcccgcctcggcgacgagggtgtcgacctgttc
ctcgtcgactcgacgaacgccgaggtccccggcttcgtcacaccggagcgcgagatcggc
ggagtgctcgacaccgtcatcggcaaggccgccaaccgggtgatcgtcgcgtccttcgcg
agccacgtgcaccgcatccagcagatcgtcgacgtcgccgagcgctacaaccggcgtgtg
gcgttcgtcggccggtcgatggtccgcaacatgcagatcgcgcaggatctgggctacctg
aacgtgcccgacggcctcgaggtcgacatcgacaccgccgcgagcctgcccgacgaccgg
gtcgtgctggtctccaccggttcgcagggcgaaccgctctcggcgctgtcccggatggcg
cgcggcgagcaccggcagatcaacatccgggccgacgacctcgtcgtcctcgcgtcgtcg
ctgatccctggcaacgagaactccgtgttcgcggtcgtcaacggcctggccaagcgcggc
gcgaaggtcgtcacccagcagaacgcgaaggtgcacgtctccggtcacgcgtcggccggc
gagctgctgtatctctacaacgcggtgcgacccaccaacgcgatgcccgtccatggcgag
tggcgccacctgcgggcgaacgccgcactggccgaggccacgggtgttccccgcgagcgg
atcgtgctcgcggaggacggtgtggtcgtcgacatggtcgacggactcgcggacatcgtc
gggcgcgtcccggtcggtcacgtctacgtcgacggcctgtcggtaggcgacgtgggcgag
tccacgctgtccgatcgtctcgtcctcggcgagggtggtttcatctccatctcagtcgcg
gtcgacgccgcgaccggccgtgcggtgagcaccccggaggtctccggtcgcggtttctcc
gacgacccggacgcactcgacgaggcggcgcagctcgtcgacaaggcgctcaacgaactc
gctgccgaaggggtcacggagacccatcgcatcgcccagggcatccgccgggtcgtcggc
cgctgggtcgccgagacctatcgtcgtcgcccgatgatcgtgcccacggtgatcccggtc
tcctga
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