KEGG   Rhodococcus sp. 2G: BO226_06025
Entry
BO226_06025       CDS       T10983                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rhzg  Rhodococcus sp. 2G
Pathway
rhzg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhzg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BO226_06025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rhzg03019]
    BO226_06025
Messenger RNA biogenesis [BR:rhzg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BO226_06025
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B_2 Lactamase_B Anti-Pycsar_Apyc1 DUF459
Other DBs
NCBI-ProteinID: APE08834
LinkDB
Position
1306462..1308267
AA seq 601 aa
MSRPARGRGRATRNAGPPARVPRRVAQNSANPQRPDARIVDPTERLGLPPKAPRDGLRVV
ALGGIGEIGRNMTVFEHQGRLLVVDCGVLFPEDQQPGVDLILPDFRYIEDRMDDVEAIVL
THGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHRQRPNLVEVVEGQTTSHGPF
ECEYFAVNHSIPDAIAVAIRTAAGIVLHTGDIKLDQLPLDNRLTDLAGFSRLGDEGVDLF
LVDSTNAEVPGFVTPEREIGGVLDTVIGKAANRVIVASFASHVHRIQQIVDVAERYNRRV
AFVGRSMVRNMQIAQDLGYLNVPDGLEVDIDTAASLPDDRVVLVSTGSQGEPLSALSRMA
RGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGAKVVTQQNAKVHVSGHASAG
ELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVPRERIVLAEDGVVVDMVDGLADIV
GRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISISVAVDAATGRAVSTPEVSGRGFS
DDPDALDEAAQLVDKALNELAAEGVTETHRIAQGIRRVVGRWVAETYRRRPMIVPTVIPV
S
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgagccgccccgcacgcggccggggccgcgccacccgcaacgccggtccgcccgcccgc
gttccgcggcgtgtcgcgcagaactcggcgaacccccagcgtccggacgcccgcatcgtc
gatcccaccgagcgattgggtctgccgccgaaggctcctcgcgacggtctgcgggtcgtc
gcgctcggcggtatcggcgagatcggccgcaacatgacggtcttcgagcaccagggccgg
ctgctcgtcgtcgactgcggggtgctctttcccgaggaccagcagccgggcgtcgacctg
atcctgcccgacttccggtacatcgaggaccggatggacgacgtcgaggcgatcgtcctc
acccacggccacgaggaccacatcggtgccgtgccgttcctgctgcgcctgcgccccgac
atcccggtcgtcgggtccaagttcaccctggcgctcgtcgcggcgaagtgccgcgaacac
cgccagcgtcccaacctcgtcgaggtcgtcgaggggcagaccacctcgcacggtccgttc
gagtgcgagtacttcgcggtcaaccactccatcccggacgcgatcgccgtcgcgatccgc
accgctgcgggcatcgtgctgcacaccggcgacatcaagctcgaccagctgccgctcgac
aaccgtctcaccgacctcgcgggcttctcccgcctcggcgacgagggtgtcgacctgttc
ctcgtcgactcgacgaacgccgaggtccccggcttcgtcacaccggagcgcgagatcggc
ggagtgctcgacaccgtcatcggcaaggccgccaaccgggtgatcgtcgcgtccttcgcg
agccacgtgcaccgcatccagcagatcgtcgacgtcgccgagcgctacaaccggcgtgtg
gcgttcgtcggccggtcgatggtccgcaacatgcagatcgcgcaggatctgggctacctg
aacgtgcccgacggcctcgaggtcgacatcgacaccgccgcgagcctgcccgacgaccgg
gtcgtgctggtctccaccggttcgcagggcgaaccgctctcggcgctgtcccggatggcg
cgcggcgagcaccggcagatcaacatccgggccgacgacctcgtcgtcctcgcgtcgtcg
ctgatccctggcaacgagaactccgtgttcgcggtcgtcaacggcctggccaagcgcggc
gcgaaggtcgtcacccagcagaacgcgaaggtgcacgtctccggtcacgcgtcggccggc
gagctgctgtatctctacaacgcggtgcgacccaccaacgcgatgcccgtccatggcgag
tggcgccacctgcgggcgaacgccgcactggccgaggccacgggtgttccccgcgagcgg
atcgtgctcgcggaggacggtgtggtcgtcgacatggtcgacggactcgcggacatcgtc
gggcgcgtcccggtcggtcacgtctacgtcgacggcctgtcggtaggcgacgtgggcgag
tccacgctgtccgatcgtctcgtcctcggcgagggtggtttcatctccatctcagtcgcg
gtcgacgccgcgaccggccgtgcggtgagcaccccggaggtctccggtcgcggtttctcc
gacgacccggacgcactcgacgaggcggcgcagctcgtcgacaaggcgctcaacgaactc
gctgccgaaggggtcacggagacccatcgcatcgcccagggcatccgccgggtcgtcggc
cgctgggtcgccgagacctatcgtcgtcgcccgatgatcgtgcccacggtgatcccggtc
tcctga

DBGET integrated database retrieval system