Rhodococcus sp. ZPP: HYG77_02955
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Entry
HYG77_02955 CDS
T11458
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhzp Rhodococcus sp. ZPP
Pathway
rhzp03030
DNA replication
rhzp03430
Mismatch repair
rhzp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhzp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYG77_02955 (dnaE)
03430 Mismatch repair
HYG77_02955 (dnaE)
03440 Homologous recombination
HYG77_02955 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhzp03032
]
HYG77_02955 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhzp03400
]
HYG77_02955 (dnaE)
Enzymes [BR:
rhzp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYG77_02955 (dnaE)
DNA replication proteins [BR:
rhzp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HYG77_02955 (dnaE)
DNA repair and recombination proteins [BR:
rhzp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HYG77_02955 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QTJ64667
LinkDB
All DBs
Position
complement(638370..641906)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMTAVGMTDHGNMYGASEFYNVAKKQG
IKPIIGIEAYVAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEELIATYHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLEISKKLDIPPLATNDCHYVTKDAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKSAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR
MPIFPVPEGETQGTWLRKEVMRGLDRRFPDGPPEEYLARADYEIGVILEMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHAC
AVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIK
ANRGIDLDLDTLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVA
GYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANNFSEPAIKALWDTILPFAGYAFNK
SHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKMGITVLPPDVNE
SEVNFASVGEDIRFGMGAVRNVGANVVASIIKARKEKSKFVDFSDYLNKIDAAACSKKVT
ESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESISSVFNV
KIPDEEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPAILEGDVKDGAQVTV
GGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFPQAYSVYGMDVTEDSVVLVKGRVSV
RDDRISLIANDLAVPDLSAVGVAKPLAVSLPLRQCTKDKLGALRQVLTRHPGTSDVHVRL
IGGTEITLWKVDDVLRVEPSSALMGDLKALLGPSCLSV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgtacatctgcacaatcacaccgagtattcgatgctcgacggtgcg
gccaaggtcggccccctgttcgaagaggccgagcggttgggaatgaccgcggtgggaatg
accgaccacggcaacatgtacggagccagcgagttctacaacgtggcgaagaagcagggc
atcaagccgatcatcgggatcgaggcctacgttgcgcccgaatcccgtttcaacaccaaa
agggttctgtggggcgaccgcagccagaagtccgacgacgtctccggtagcggtgcgtac
acccacatgacgatggttgcggagaacgccaccggtctgcgaaacctgttcaagctgtcc
tccctcgcgtcgatcgaggggcagctcggcaagtgggcgcgcatggacgaggagctgatc
gccacttaccacgaaggcatcatcgccaccaccgggtgcccgtccggtgaaatccagacg
cgtctgcggctcggtcacgaccgggaggccctcgaagccgccgcgaagtggcaggagatc
tggggcaaggacaacttcttcctcgaactgatggaccacggtctgtcgatcgagcggcgg
gtccgggagggactgctcgagatcagcaagaaactcgacattccgccgctcgccaccaac
gactgccactacgtcaccaaggacgccgcggagaaccacgaggccctcctctgtatccag
accggtaagacgctgtccgatcccacccggttcaagttcgacggcgacggctactacctg
aagtccgccgcggagatgcgggcattgtgggacgaccaggtgcccggcgcgtgcgacaac
acgctgctgatcgccgagcgtgtccagtcgtacgacgacgtgtgggcgcaccacgaccga
atgccgatcttccctgttcccgagggcgagacgcagggcacctggttgcgcaaggaggtc
atgcgcggactggaccgccggttccccgacggaccgcccgaggagtacctcgcccgcgcc
gattacgagatcggcgtcatcctcgaaatgggtttcccggcatacttcctcgtcgtcggt
gacctgatcaaccacgcgcgcgaggtggggatccgcgtcggtcccggccgaggttccgcc
gcagggtcgctcgtggcgtacgcgatgggtatcaccaatatcgatcccatcccgcacggt
ctgctgttcgagcggttcctcaaccccgagcgcgtgtcgatgcccgatatcgatatcgac
ttcgacgaccgtcggcgtggtgaaatggtgcgctacgccaccgacaagtggggaagcgac
cgggtggctcaggtcatcacgttcggcacaatcaagacgaaggcggccatcaaggattcc
gccagggtccagttcggtcagccgggattcgcgatcgccgatcagatcaccaaggcgctg
ccgccgcccatcatggccaaggacatttcggtgtcgggcatcaccgatccgaatcacgag
cggtacaaggaagcggtcgaggttcgtgccctcatcgactccaacccggacgtcgcgaag
atctaccagactgccaagggtctcgaaggcctgatccgcaacgcgggcgtccacgcctgc
gcggtgatcatgtcgtccgagccgttgatggacgccattccggtgtggaagcgcgcccag
gacggcgccatcatcaccggttgggactatccctcgtgtgaggccatcggcctcctcaag
atggacttcctcggccttcgaaacctcaccgtcatcggtgatgccatcgacaacatcaag
gccaaccgaggcatcgacctcgacctcgacacgctcccgctcgacgatccggcaacctac
gaattgctctcgcgcggtgacactctcggtgtcttccagctcgacggcagcgccatgcgc
gatctgctgcgccgcatgcagcccaccggcttcgaggacatcgtcgctgtgctcgcgctg
tatcgcccgggcccgatgggcatgaacgcgcacaacgactatgccgaccgcaagaacggc
cgccaagaggtcaagcccatccacccggagctcgaggagcccctgaaggagattctcgcc
gacacctacgggctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
gggtactcgctggggcaggccgacattctccgtcgggccatgggtaagaagaaactctcc
gtgctggaggaggcgtacgccgggttccgcgagggcatgctcgccaacaacttctccgag
ccggcgatcaaggcattgtgggacaccatcctcccgttcgccggctacgccttcaacaag
tctcacgccgccgggtacgggttggtgtcgttctggactggatatctcaaggccaactac
cccgccgagtacatggcgggcctgctcacctcggtgggtgacgacaaggacaaggccgcc
atctatctcgccgactgccgcaagatgggtatcacggtgttgccgcccgacgtgaacgag
tcggaggtcaatttcgcctcggtcggcgaagacatccgcttcggcatgggcgcggtgcgc
aacgtcggggccaatgtggtcgcgtcgatcatcaaggccaggaaggagaagtccaagttc
gtggacttctcggactacctcaacaagatcgacgccgcagcctgctccaagaaggtcacc
gaatcgttgatcaaggcgggtgggttcgactcgctcggccatccccgcaagggactcatg
ctcgtccatgccgacgcgatcgacgcagtgatgggtaccaagaaggcggaggccatcggc
cagttcgacctgttcgggggcgacgacgccgacgaatcgatctcctcggtattcaacgtc
aagattcccgacgaagaatgggacagcaagcaccgactggcgttggaacgcgagatgttg
gggctctacgtttcggggcatccactcaacggcgtcgagcacgtcctgtccgcacagtcg
gacacggcgattccggccatcctcgagggcgatgttaaggacggcgcccaggtcaccgtc
ggcggtattctcgcctcggtcaaccggcggatcaacaagaacggtctgacgtgggcgtcg
gcacagctcgaggatctgtcgggcggtatcgaggtgctgttcttcccgcaggcgtactcg
gtctacgggatggacgtcaccgaggattccgtcgtcctcgtcaaggggcgggtgtctgtg
cgtgacgaccgcatctcacttatcgcgaacgaccttgcggtgccggacctttcggccgtc
ggtgtcgccaagccgctggcggtgagcctcccgttgcgtcagtgcaccaaagacaagctg
ggcgcactccggcaggtactcactcggcacccgggaacctcggacgtgcatgtgcggttg
atcggtggaaccgagatcacgttgtggaaggtcgacgacgtgctgcgtgtcgagccgtcg
tcggcgttgatgggcgacctcaaggcgctgctcgggcccagctgtctgtcggtgtga
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