Rhodococcus sp. ZPP: HYG77_05390
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Entry
HYG77_05390 CDS
T11458
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhzp Rhodococcus sp. ZPP
Pathway
rhzp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhzp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG77_05390 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhzp03021
]
HYG77_05390 (rho)
03019 Messenger RNA biogenesis [BR:
rhzp03019
]
HYG77_05390 (rho)
Transcription machinery [BR:
rhzp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HYG77_05390 (rho)
Messenger RNA biogenesis [BR:
rhzp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HYG77_05390 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QTJ65088
LinkDB
All DBs
Position
complement(1144775..1146904)
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AA seq
709 aa
AA seq
DB search
MTDTDLIAAPADASSVDTVGAQAGDSSQASSTAPENGAVTASTKRAEARRGAGLSGMVLT
ELRALAGELGIKGISGMRKGDLIAAIKDRQGASSAPAAATTEAAPRTRTSRTKREQPAQT
ALDVSPQQETAEKAAESKAPEPAVADGSAADTDVPEGGRRGRQRRGSSRRAGAPEQGDQA
DSGQDAPSQNAAVQNGVDTQQAERKQVDDRQDSAEKSGRQDGSGEQSGDRTRRERGDNRG
SDRGDRNDRGDTRERDRGDTRERDRDRGDRNQGSNNGPRTSDNRDNRGGDDEEGGRGRRG
RRFRERRRGRDRGEGGGGDVRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVY
VSMNLIRKNGLRRGDAITGAVRVAREGDQGNQRQKFNPLVRIDTVNGGDIEAAKKRPEFG
KLTPLYPNQRLRLETTPNILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIAT
NNPECYLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAG
KDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIA
TAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEA
AVLHKLRRVLSGLDSHQAIDLLIDRLKKSKSNLEFLMQVSKTAPGAIDD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcgccgctcctgcggacgcctcctcggtggataccgttggc
gcgcaggcaggcgactcttcacaggcgtcatcgaccgcaccggaaaacggtgcagtgacg
gcctccacaaagcgcgccgaggcgcgccgaggtgccgggctgtccgggatggtgctgacc
gagctccgtgcccttgcgggcgagctcggtatcaaaggcatttcagggatgcgtaagggc
gacctgatcgccgcgatcaaggatcggcagggcgcctcgtcggcgccggccgctgcgacg
accgaggccgcgccccgcacccggacgtcccgcaccaagcgtgagcagcccgcgcagact
gccctcgacgtgtctccgcagcaggagaccgccgagaaggcggccgaaagcaaggcgccg
gaacctgcagtcgccgacggcagcgcggccgacaccgatgtccccgaggggggccgacgc
gggcgtcagcgccgtggctcctcccgccgggcaggtgcccctgagcagggcgaccaggcc
gacagcggacaggacgctccctcgcagaatgctgccgtccagaatggcgtcgacacccag
caggccgagcgcaagcaggtcgacgaccgtcaggacagtgcggaaaagtccggaaggcag
gacggctccggtgagcagtccggcgaccgcacgcggcgtgagcgtggggacaaccgcggc
agcgaccgtggtgaccggaacgaccgcggcgacacccgcgagcgggaccgcggtgacacg
cgcgaacgtgaccgcgaccggggtgatcgcaaccagggcagcaacaacggcccgcgcacg
agcgacaaccgtgacaaccggggcggcgacgacgaagaaggcggccgcggacgacgtgga
cggcgcttccgcgagcgtcgtcgtgggcgcgaccgcggcgaaggcggcggcggggacgtg
cgtgagacggagatccgggaagacgatgtcctgcagccggtagccggcatcctcgacgtc
ctcgacaactacgctttcgtgcggacgtccgggtacctcgcgggccccaacgacgtctac
gtgtcgatgaacctcatccgaaagaacggacttcgccgcggcgacgcgatcaccggtgcc
gtccgggttgcacgcgagggtgaccagggaaatcagcgccagaagttcaacccgttggtg
cggatcgacacggtcaacggcggcgacatcgaggcggcgaagaagcgccccgagttcggg
aagctcaccccgctgtacccgaatcagcggttgcgtctcgagaccacgccgaacatcctc
accacccgcgtcatcgatctcgtgatgccgatcggtaagggtcagcgcgcgctcatcgtg
agcccgccgaaggccggtaagaccagcgttctgcaggccatcgccaacgcgatcgcgacc
aacaaccccgagtgctacctgatggtcgtgctggtcgacgagcgtcccgaagaggtcacc
gacatgcagcgatcggtcaagggtgaggtcatttcctcgaccttcgaccgcccgccggga
gaccacacctcggtcgccgagctcgccatcgagcgtgcgaagcgtctggtggaggccggt
aaggacgtcgtcgtccttctcgactcgatcactcgtctcggccgcgcgtacaacaactcg
tcgccggcgtcgggccgcatcctgtccggtggtgtcgactcgacagcgctgtacccgccg
aagcgtttcctcggtgcagcccgcaacatcgagaacggcggttcgctcacgatcatcgcg
acggccatggtcgagaccggttccaccggcgacaccgtgatcttcgaggagttcaagggc
accggtaacgccgagctcaagctcgaccgcaagatcgcggaacggcgggtgttcccggct
gtcgacgtcaatccttcgggaacgcgtaaggacgagctgctgctcagtccggatgaggcc
gcggtgctgcacaagctccgccgggtgctgtctggtctcgattcgcaccaggccatcgat
ctgctgatcgatcgcctcaagaagagcaagagcaatctcgagttcctcatgcaggtgtcg
aagaccgctccgggcgcgatcgacgactga
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