Rhodococcus sp. ZPP: HYG77_06900
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Entry
HYG77_06900 CDS
T11458
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rhzp Rhodococcus sp. ZPP
Pathway
rhzp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhzp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HYG77_06900 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhzp03400
]
HYG77_06900 (recD)
Enzymes [BR:
rhzp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HYG77_06900 (recD)
DNA repair and recombination proteins [BR:
rhzp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HYG77_06900 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
UvrD-helicase
Viral_helicase1
NAT10_TcmA_helicase
AAA_22
SH3_13
TraI_hel_assoc_N
PhoH
AAA_24
SLFN-g3_helicase
Mg_chelatase
AAA_7
AAA_16
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QTJ65354
LinkDB
All DBs
Position
complement(1463249..1465117)
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AA seq
622 aa
AA seq
DB search
MTDVRVAQRGKGVLRIFNEAGVLAAADVHVALRLSALAGETSPDVYLATALAVRAVRAGS
VCLDLTRLREVTIDEESEVDLDDLPWPDDSTVIEALRRSPLVVGGPAGPLRPLRLVDTAE
GELLYLDRYFRQEETIRRVLDQRASGHPVVDEASLRRGLDTLFRDQNDPAGSSAPPDRQR
IAAAVAATHWTSVIVGGPGTGKTHTVARVLALLSMQTDRPRRIALAAPTGKAAARLQESV
RDQAGELGLPPDLTAMTLHRMLGWQRGRGSRFRYNADNHVPYDVIVVDETSMVSLTMMCR
LLEALRPNTQLVLVGDPDQLTSVDAGAVLADLVARPMSGKENPLLARLVGKDMDAADDPD
EAALSAAERDRLRGGVVRLSRGRRFGGGIAQLAVAVRDADEDRVMDLLRSDAPEVSFHDV
DDLGALRKDVVDTAAGVTEAASGGDASAALQLSEAHRLLCAHREGPYGVAWWARQAMEWI
GEASGQRLDPDRWYPGQPLLVTANDHETRIYNGDTGVIVRRADDELVAAFARGNEPFLLH
PTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGAESSLLTRELLYTAITRARRHVRIIGTE
EAVRAGVQRRVLRASGLRRTFR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtccgggtagcccagcgcggcaagggtgtgctgcgaatcttcaacgaggca
ggagtgctcgcggctgcggatgtccatgtggcgctgcggttgtccgctctcgccggggag
acgtcgccggacgtctacctggccaccgccctcgcggtccgggcagtgcgggccggctcg
gtgtgcctcgatctgactcggctccgggaagtgacgatcgacgaggagtccgaggtcgat
ctggacgatctgccgtggccggacgactccacggtcatcgaggcgctgcgccgcagtccg
ctcgtcgtcggtggaccggccggaccgctgcgaccgctgcggctggtggataccgctgaa
ggcgaattgctctacctcgaccggtatttccggcaggaggagacgatccgtcgcgtcctc
gaccagcgcgcttccgggcaccccgtcgtcgacgaagcatcactacgccgcgggttggac
actctgttccgcgatcagaacgatccggccggctcctcggccccgccggatcggcaacgg
atcgcagccgctgtcgccgcgacccactggacctcggtgatcgtgggaggaccgggtacc
ggaaaaacgcacaccgtggcccgcgtgctggccctgctgtcgatgcagaccgaccgacca
cgacgcatcgccctcgccgcacccacgggcaaggcggcggctcggttgcaggaatcggtg
cgggatcaggcgggcgagctgggcttgccacccgatctgacagcgatgacgctgcaccgc
atgctgggctggcaacgcggacggggcagccgattccgctacaacgccgacaatcatgtg
ccctacgacgtgatcgtggtggacgagacctcgatggtgtcgttgaccatgatgtgccgg
ctcctcgaggcgcttcgtcccaacacacaactcgtgctcgtcggcgatcccgaccagttg
acgtccgtcgacgcgggcgcggtgctggccgacctggtggctcgacccatgtcagggaag
gagaatccgctactcgcacgtctggtcgggaaggacatggatgcggcggacgacccggac
gaggccgcgctgagtgcggcggaacgggatcggctgcgcgggggagtcgtgcggctcagc
cggggccgccgcttcggcggtggcatcgcccaactcgctgtcgcggtgcgagacgcggac
gaggaccgcgtgatggatctgctgcgcagtgatgcccccgaggtgtcgttccacgacgtc
gacgatctcggggcgctgcggaaggacgtggtcgacactgcagcgggtgtcaccgaggcc
gcgtcgggcggcgacgcctcggcggcactgcagctttcggaggcgcatcgcctgctctgt
gcgcaccgggagggtccgtacggtgtcgcatggtgggcgcggcaggccatggagtggatc
ggtgaggcttcagggcagcggctggacccggaccgctggtatcccggtcagccgcttctg
gtcacggccaacgatcacgagacgcgcatctacaacggtgacaccggggtgatcgtgcga
cgcgccgacgacgaactcgttgccgccttcgcgcgcggcaacgaaccctttctgttgcat
cccacgcacctgtcggcggtgcagaccgtctacgccatgacgattcaccgcagtcagggc
agtcagtacgacacggtgtccgtggtgctaccgggagcggagtcctcgttgctgacccgg
gaactgctgtatacggcgatcacgcgggcccgtcggcacgtgcggatcatcgggacagag
gaggcggtgcgggcgggtgtgcaacgccgggtgctgcgggcgagtgggctgcggcggacc
ttccggtag
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