Rhodococcus sp. ZPP: HYG77_30095
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Entry
HYG77_30095 CDS
T11458
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rhzp Rhodococcus sp. ZPP
Brite
KEGG Orthology (KO) [BR:
rhzp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhzp03016
]
HYG77_30095
Enzymes [BR:
rhzp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HYG77_30095
Transfer RNA biogenesis [BR:
rhzp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HYG77_30095
Prokaryotic type
tRNA splicing ligases
HYG77_30095
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
QTJ69365
LinkDB
All DBs
Position
6531096..6532298
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AA seq
400 aa
AA seq
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MFPVTLEGTAAPTLMWAEERSIEPAALAQLRTMADLPWVHGVRVMPDVHVGKGATVGSVI
AMRQAVAPAAVGVDIGCGMTAVRTDVTADDLPDSLRSLRARIERAVPVGFAMHENSLDTG
ALSVSGAGVHKGWTRFWQQFRDLHPGVQSRESKAMKQIGTLGGGNHFIEVCLSDADEVWL
MLHSGSRNIGKELAERHIAVARTLQHNQRLVDRDLAVFLAGTPEMDAYRHDLSWAQEYAA
RNRAVMLALIMQAFRDALPTRPVRFDDPISCHHNYVSEEVVDGETMLVTRKGAIRAGKGD
LGLIPGSMGTGSYVVRGLGSELSFNSASHGAGRTMSRTKAKKRFTVDDLRRQTSGVESRK
DAGVIDEIPAAYKDIEQVIDAQADLVEVVAHLRQVVCVKG
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccgtcaccctcgaaggcactgccgcgccgaccttgatgtgggcggaggaacgg
tccatagagccggccgcacttgcccagctccgcaccatggcagacctgccgtgggtccac
ggtgtccgcgtcatgcccgacgtccatgtcggtaagggcgcgacggtcggctccgtcatc
gcgatgcgtcaggctgtcgcacctgccgccgtgggggtcgacatcggctgcggcatgaca
gcggtcaggaccgatgtcaccgccgacgacctgccggacagtctgcggtcgctgcgcgcg
cgcatcgagcgtgcggttccggtgggattcgccatgcacgagaactctctcgacaccggt
gccctctcggtgtccggcgccggcgtccacaagggatggacgcgattctggcagcagttc
cgcgatctgcacccgggcgtccagtctcgtgaatcgaaggcgatgaagcagatcggaacg
ctcggcggcgggaatcacttcatcgaggtgtgtctgtccgacgcagacgaggtgtggctc
atgcttcactcaggatcccgcaacatcgggaaggaactggccgagcgacacatcgccgtg
gcgcggacgttgcagcacaaccagaggctggtcgatcgtgatctggcggtctttctcgca
ggtacacccgagatggacgcctaccgccacgacctgtcgtgggcccaggaatacgcggcc
cgcaaccgcgccgtcatgctcgccctgatcatgcaggcattccgggacgctctgccgact
cggcccgtccgtttcgacgatccgatctcgtgtcaccacaactatgtgtccgaggaggtc
gtcgacggggagacgatgctcgtgacccgcaagggtgctattcgcgcaggaaagggagat
ctcggtctcattcccggttccatgggcaccggttcgtacgtggtgcgcggactggggtcg
gaactgtccttcaactccgcctcgcacggcgccggtcggaccatgagccgtacgaaggcg
aagaagcgtttcacggtcgacgacttgaggcgtcaaacgtccggcgtcgagtcgcgtaag
gacgccggggtaatcgacgagatcccggccgcgtacaaggacatcgagcaggtgatcgat
gcgcaggccgatctggtcgaggtcgtcgcacacctgcggcaggtcgtgtgtgtgaagggc
tag
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